View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16051_high_15 (Length: 223)
Name: NF16051_high_15
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 27531145 - 27530958
Alignment:
| Q |
17 |
ataatatagtttatgtcataaacgctttaatcagattaattaaaaccaagaactttcagaaatcaagtactaaaacataatggaagcatgtgaaaattat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27531145 |
ataatatagtttatgtcataaacgctttaatcagattaattaaaaccaagaactttcagaaatcaagtactaaaacataatggaagcatgtgaaaattat |
27531046 |
T |
|
| Q |
117 |
aagactgtaccttattatcacgattaagttcagcccaacaatcatctgcatcaatgaaaatttgtggattaaggttaatagcatgtgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27531045 |
aagactgtaccttattatcacgattaagttcagcccaacaatcatctgcatcaatgaaaatttgtggattaaggttaatagcatgtgc |
27530958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 27525555 - 27525395
Alignment:
| Q |
54 |
aattaaaaccaagaactttcagaaatcaagtactaaaacataatggaagcatgtgaaaattataaga-ctgtaccttattatcacgattaagttcagccc |
152 |
Q |
| |
|
||||| || ||||||||||| |||||||||| |||||| |||| |||||||||||||| | || || ||||||||||||||||||||||||||||| |
|
|
| T |
27525555 |
aattataagcaagaactttcggaaatcaagtgagaaaacagaatg-aagcatgtgaaaatcgcatgatctataccttattatcacgattaagttcagccc |
27525457 |
T |
|
| Q |
153 |
aacaatcatctgcatcaatgaaaatttgtggattaaggttaatagcatgtgcctatgctact |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||||||||| ||||||| |||| |||| |
|
|
| T |
27525456 |
aacaatcatctgcaacaatgaaaatttgtagataaaggttaatttcatgtgcttatgatact |
27525395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University