View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16051_high_3 (Length: 410)
Name: NF16051_high_3
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 36445645 - 36445257
Alignment:
| Q |
1 |
ccatggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445645 |
ccatggtggaagttacaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacac |
36445546 |
T |
|
| Q |
101 |
ggaggacacggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactaatcataatgatatcttatctatcttcatgcac |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
36445545 |
ggaggacacggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgatatct-----atcttcatgcac |
36445451 |
T |
|
| Q |
201 |
catgcactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445450 |
catgcactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatag |
36445351 |
T |
|
| Q |
301 |
atatttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgttatct |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445350 |
atatttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgttatct |
36445257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 3 - 392
Target Start/End: Complemental strand, 36435743 - 36435354
Alignment:
| Q |
3 |
atggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacacgg |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36435743 |
atggtggtggttacaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacacgg |
36435644 |
T |
|
| Q |
103 |
aggacacggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactaatcataatgatatcttatctatcttcatgcacca |
202 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
36435643 |
gggacatggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgatatct-----atcttcatgcacca |
36435549 |
T |
|
| Q |
203 |
tgcactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatagat |
302 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36435548 |
tgtactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatagat |
36435449 |
T |
|
| Q |
303 |
atttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatga----taagcttttcc-aaaaaatgatgaatgtgttat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
36435448 |
atttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaacgatgattattaagcttttccaaaaaaatgatgaatgcgttat |
36435354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 110 - 394
Target Start/End: Complemental strand, 36468005 - 36467726
Alignment:
| Q |
110 |
ggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactaatcataatgatatcttatctatcttcatgcaccatgcactc |
209 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
36468005 |
ggtggaggtggacacggtagtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgatatct-----atcttcatgcaccatgcactc |
36467911 |
T |
|
| Q |
210 |
tttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatagatatttctt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36467910 |
tttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatagatatttctt |
36467811 |
T |
|
| Q |
310 |
cgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgttatct |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36467810 |
cgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgttatct |
36467726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 36411275 - 36411144
Alignment:
| Q |
107 |
cacggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactaatcataatgatatcttatctatcttcatgcaccatgca |
206 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||| | ||||||||||| |||||| ||||||||| |||||||||| | |||||||||| || |
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|
| T |
36411275 |
cacggtagacgtggtcacggtggtcatggtgccgtggaaactgaggacgaaactcgaaactaatcgtaatgatatcat---------catgcaccataca |
36411185 |
T |
|
| Q |
207 |
ctctttctcagtaatatatttcatgaataaaaataatgttg |
247 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36411184 |
ctctttcttagtaatatatttcatgaataaaaataatgttg |
36411144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 36468086 - 36467989
Alignment:
| Q |
5 |
ggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacacgg |
102 |
Q |
| |
|
||||| |||| |||| | ||||||| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
36468086 |
ggtggtagtttcaacaaaggtggagctagttacaaccatggacgaggtagttaccaccacggttgaggtggttacaaccatggtggaggtggacacgg |
36467989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 36411067 - 36411013
Alignment:
| Q |
323 |
gtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaa |
377 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36411067 |
gtataaatttgcataagactatgtatttgtaacgatgataagcttttccaaaaaa |
36411013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 36436073 - 36435980
Alignment:
| Q |
3 |
atggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtgg |
96 |
Q |
| |
|
|||||||| |||| ||||| || || ||| |||||||||| || |||||| ||||| |||| ||||| |||||||||||| ||||||||||||| |
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|
| T |
36436073 |
atggtggaggttataaccacggcggtggtggttacaacaacggtggaggtggttacaaccatggtggtggtggttacaacaacggtggaggtgg |
36435980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 36436043 - 36435962
Alignment:
| Q |
12 |
gttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggagg |
93 |
Q |
| |
|
|||||||| | ||||||||| |||||||| |||| || ||| ||||| || ||||||||||||| |||||||| |||||||| |
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|
| T |
36436043 |
gttacaacaacggtggaggtggttacaaccatggtggtggtggttacaacaacggtggaggtggctacaaccatggtggagg |
36435962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 36435953 - 36435838
Alignment:
| Q |
3 |
atggtggaagttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacacgg |
102 |
Q |
| |
|
||||||| |||||||||| || |||||| |||||||| | || |||||| ||||| |||| || ||||||||||||| | ||||| || || ||||| |
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|
| T |
36435953 |
atggtggtggttacaaccacggcggaggtggttacaaccacggtggaggtggttacaaccatggcggaggtggttaca---atggtggtggaggccacgg |
36435857 |
T |
|
| Q |
103 |
aggacacggtggaggtggt |
121 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
36435856 |
aggtcacggtggaggtggt |
36435838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 36445886 - 36445823
Alignment:
| Q |
33 |
gttacaacaatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtgg |
96 |
Q |
| |
|
||||| |||| || || ||| |||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
36445886 |
gttaccacaacggtggtggtggttaccacaacggtggaggtggttacaaccatggtggaggtgg |
36445823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 36436022 - 36435953
Alignment:
| Q |
12 |
gttacaaccatggtggaggtagttacaacaatggaggaggtagttaccaccacggtggaggtggttacaa |
81 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || |||||| | ||| |||| |||||||| |||||||| |
|
|
| T |
36436022 |
gttacaaccatggtggtggtggttacaacaacggtggaggtggctacaaccatggtggaggaggttacaa |
36435953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 36475716 - 36475606
Alignment:
| Q |
269 |
ttatctatcttgccactatatagtatagatagatatttcttcgggagaaatcatgtataaatttgcatcagactatgta-tttgtaatgatgataagctt |
367 |
Q |
| |
|
|||||||||||| |||||||| ||| | ||||||||||| | | ||||||||||||||||||||| || ||||||| ||||| | |||||| ||| | |
|
|
| T |
36475716 |
ttatctatcttgtcactatat-gta-atatagatatttcattagtggaaatcatgtataaatttgcaacaatctatgtattttgtgacgatgatgagcgt |
36475619 |
T |
|
| Q |
368 |
ttccaaaaaatga |
380 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36475618 |
ttccaaaaaatga |
36475606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 36468271 - 36468229
Alignment:
| Q |
54 |
gttaccaccacggtggaggtggttacaaccacggtggaggtgg |
96 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
36468271 |
gttaccacaacggtggaggtggttaccacaacggtggaggtgg |
36468229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 36492631 - 36492558
Alignment:
| Q |
316 |
aaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgt |
389 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||| ||| ||||||| ||| || || ||||||||| |
|
|
| T |
36492631 |
aaatcatgtataaatttgcatcaatctatgtatctgtgatggggatgagcttttgcaagaagtggtgaatgtgt |
36492558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 36468271 - 36468223
Alignment:
| Q |
33 |
gttacaacaatggaggaggtagttaccaccacggtggaggtggttacaa |
81 |
Q |
| |
|
||||| |||| || |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
36468271 |
gttaccacaacggtggaggtggttaccacaacggtggaggtggttacaa |
36468223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 36475945 - 36475909
Alignment:
| Q |
60 |
accacggtggaggtggttacaaccacggtggaggtgg |
96 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
36475945 |
accatggtggaggcggttacaaccacggtggaggtgg |
36475909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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