View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16051_low_1 (Length: 425)
Name: NF16051_low_1
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Complemental strand, 40797474 - 40797062
Alignment:
| Q |
12 |
catcatcctgttagcccttatattgaacaattaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaa |
111 |
Q |
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| T |
40797474 |
catcatcctgttagccctgatattgaacaatgaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaa |
40797375 |
T |
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| Q |
112 |
cgtaccacattactaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgttaaccacaaacttgg |
211 |
Q |
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| T |
40797374 |
cgtaccacgttactaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgtcaaccacaaacttgg |
40797275 |
T |
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| Q |
212 |
aggttaaacatctcaatgaacttcaaaattaaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaa |
311 |
Q |
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| T |
40797274 |
aggttaaacatc-caatgaacttcaaaattaaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaa |
40797176 |
T |
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| Q |
312 |
caatgagcagaattttaatagtcctaaagtaaattttcactagtcttcactcatcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaa |
411 |
Q |
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| T |
40797175 |
caatgagcagaattttaatagtcctaaagtaaattttcactagtcttcactcatcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaa |
40797076 |
T |
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| Q |
412 |
ggcccttgtgcttc |
425 |
Q |
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| T |
40797075 |
ggcccttgtgcttc |
40797062 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 8621058 - 8621099
Alignment:
| Q |
365 |
tcagtgcgcatatccaaattgaatgaattgtatgaaacagaa |
406 |
Q |
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| T |
8621058 |
tcagtgcacacatccaagttgaatgaattgtatgaaacagaa |
8621099 |
T |
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