View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16051_low_10 (Length: 318)
Name: NF16051_low_10
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 2789034 - 2789337
Alignment:
| Q |
1 |
taccgttacaaatcaattctatttcggtcatacgagcttatgtattataagctatctgctataagttaacaattttaccttgcaaaatagaggctatgta |
100 |
Q |
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| T |
2789034 |
taccgttacaaatcaattctattttggtcatacgagcttatgtattataagctatctgctataagttaacagttttaccttgcaaaatagaggctatgta |
2789133 |
T |
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| Q |
101 |
gcaagaaaa-aagtagttaaaaggataaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgttaataacaatcatggtttt |
199 |
Q |
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| T |
2789134 |
gcaagaaaaaaagtagttaaaaggataaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgttgttaacaatcatggtttt |
2789233 |
T |
|
| Q |
200 |
atatgcttgatagttgactgaacttcaactttctctcgagtctgaaaacctcatctccgaacttgtcaaattccttgattctttatcggatgctgcactc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2789234 |
atatgcttgatagttgactgaacttcaactttctctcgagtctgaaaacctcatctccgaacttgtcaaattccttgattctttaccggatgctgcactc |
2789333 |
T |
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| Q |
300 |
tctg |
303 |
Q |
| |
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|||| |
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| T |
2789334 |
tctg |
2789337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 303
Target Start/End: Complemental strand, 2417410 - 2417141
Alignment:
| Q |
34 |
gagcttatgtattataagctatctgctataagttaacaattttaccttgcaaaatagaggctatgtagcaagaaaaaagtagttaaaaggataaaaatgg |
133 |
Q |
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||||| |||| ||||||||||| |||||| |||||||| |||||||| || ||||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
2417410 |
gagctcatgtgttataagctatatgctattagttaacagttttacctagcgaaataaaggctatgtagcaagaaaaaagaagttgaaaggataaaaatgg |
2417311 |
T |
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| Q |
134 |
atgcatgtttgtcttttttatattttattgaaaggttattaacttgttaataacaatcatggttttatatgcttgatagttgactgaacttcaactttct |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
2417310 |
atgcatgtttgtcttttttatattttattgaaaggttattaacttgctgttaacaatcatggttttatatgcttcgtagtttactgaacttcaactttct |
2417211 |
T |
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| Q |
234 |
ctcgagtctgaaaacctcatctccgaacttgtcaaattccttgattctttatcggatgctgcactctctg |
303 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||| ||||||| |
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| T |
2417210 |
ctcgagtctgaaaacctcatctcagagcttgtcaaattccttgattcttcatcggttgctgctctctctg |
2417141 |
T |
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