View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16051_low_11 (Length: 314)
Name: NF16051_low_11
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 14684903 - 14685190
Alignment:
| Q |
8 |
ggacatcatcaagagactacttgctacatttcatgacatcgacctttgtgtcctcaaagacttttgcatttgtagtgccaatttgttcgtcgagaacaaa |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14684903 |
ggacaacatcaagagactacttgctacatttcatgacatcgacctttgtgtcctcaaagacttttgcatttgtagtgccaatttgttcgtcgagaacaaa |
14685002 |
T |
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| Q |
108 |
ctccaccttagcagcgggcttagcctccggcagtacagtgtagctcccctcgatataatgcagccaaacctgaatgttgttactccccacctgagaaact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14685003 |
ctccaccttagcagcgggcttagcctccggcagtacagtgtagctcccctcgatataatgcagccaaacctgaatgttgttactccccacctgagaaact |
14685102 |
T |
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| Q |
208 |
ggcaaggggtgttgaagccctgcagttcggcgagagagttcattcagtgccacaaaaagagcgttgacctcttctttagtgtaccctt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14685103 |
ggcaaggggtgttgaagccctgcagttcggcgagagagttcattcagtgccacaaaaagagcgttgacctcttctttagtgtaccctt |
14685190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 17663222 - 17662937
Alignment:
| Q |
8 |
ggacatcatcaagagactacttgctacatttcatgacatcgacctttgtgtcctcaaagacttttgcatttgtagtgccaatttgttcgtcgagaacaaa |
107 |
Q |
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| T |
17663222 |
ggacaacatcaagagactacttgctacatttcatgacatcgacctttgtgtcctca--gacttttgcatttgtagtgccaatttgttcgtcgagaacaaa |
17663125 |
T |
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| Q |
108 |
ctccaccttagcagcgggcttagcctccggcagtacagtgtagctcccctcgatataatgcagccaaacctgaatgttgttactccccacctgagaaact |
207 |
Q |
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| T |
17663124 |
ctccaccttagcagcgggcttagcctctggcagtacagtgtagctcccctcgatataatgcagccaaacctgaatgttgttactccccacctgagaaact |
17663025 |
T |
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| Q |
208 |
ggcaaggggtgttgaagccctgcagttcggcgagagagttcattcagtgccacaaaaagagcgttgacctcttctttagtgtaccctt |
295 |
Q |
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| T |
17663024 |
ggcaaggggtgttgaagccctgcagttcgacgagagagttcgttcagtgccacaaaaagagcgttgacctcttctttagtgtaccctt |
17662937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 3495020 - 3495134
Alignment:
| Q |
131 |
cctccggcagtacagtgtagctcccctcgatataatgcagccaaacctgaatgttgttactccccacctgagaaactggcaaggggtgttgaagccctgc |
230 |
Q |
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|||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
3495020 |
cctctggcagcacagtgtagctcccctcaatataatgtagctgaacctgaatgttgctactccccacctgagaaaccggcaaggggtgttgcagcccgga |
3495119 |
T |
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| Q |
231 |
agttcggcgagagag |
245 |
Q |
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|||||||||| |||| |
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| T |
3495120 |
agttcggcgacagag |
3495134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 3508566 - 3508672
Alignment:
| Q |
139 |
agtacagtgtagctcccctcgatataatgcagccaaacctgaatgttgttactccccacctgagaaactggcaaggggtgttgaagccctgcagttcggc |
238 |
Q |
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|||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| | |||||||| |
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| T |
3508566 |
agtacagtgtagttcccctcaatataatgcagccgaacctgaatgttgttgctcccaacctgagaaaccggcaaggggtgttgcagcccagaagttcggc |
3508665 |
T |
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| Q |
239 |
gagagag |
245 |
Q |
| |
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|| |||| |
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| T |
3508666 |
gacagag |
3508672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 35561334 - 35561424
Alignment:
| Q |
131 |
cctccggcagtacagtgtagctcccctcgatataatgcagccaaacctgaatgttgttactccccacctgagaaactggcaaggggtgttg |
221 |
Q |
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|||| ||||||||||| ||| | || || ||||||||||||| ||||||||||||| | |||||||||||||| | |||||| |||||||| |
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| T |
35561334 |
cctcaggcagtacagtatagtttccatcaatataatgcagccgaacctgaatgttgctgctccccacctgagatattggcaatgggtgttg |
35561424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 34281627 - 34281589
Alignment:
| Q |
79 |
gtagtgccaatttgttcgtcgagaacaaactccacctta |
117 |
Q |
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| T |
34281627 |
gtagtgccaatttgttcgtcaagaacagactccacctta |
34281589 |
T |
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