View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16051_low_14 (Length: 261)
Name: NF16051_low_14
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 3217008 - 3217238
Alignment:
| Q |
15 |
aaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3217008 |
aaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaa |
3217107 |
T |
|
| Q |
115 |
gaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3217108 |
gaagcttggtgtgtgagttgtatgtaatgagaggatgttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtc |
3217207 |
T |
|
| Q |
215 |
aatttcacggcgaatccattcatgacgtttt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3217208 |
aatttcacggcgaatccattcatgacgtttt |
3217238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 3203086 - 3203303
Alignment:
| Q |
15 |
aaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaa |
114 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||||||||||| |
|
|
| T |
3203086 |
aaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaaccccaa |
3203185 |
T |
|
| Q |
115 |
gaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtc |
214 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
3203186 |
gaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttcttccggggtc |
3203285 |
T |
|
| Q |
215 |
aatttcacggcgaatcca |
232 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
3203286 |
aatttcacggcaaatcca |
3203303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 3209060 - 3209278
Alignment:
| Q |
15 |
aaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaaccccaa |
114 |
Q |
| |
|
||||||| ||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| || ||||| | ||||| |||||||| |
|
|
| T |
3209060 |
aaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaaccccaa |
3209159 |
T |
|
| Q |
115 |
gaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctggggtc |
214 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| || || || | ||| |||||||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
3209160 |
gaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctagagccttggcttcctccggggtc |
3209259 |
T |
|
| Q |
215 |
aatttcacggcgaatccat |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3209260 |
aatttcacggcgaatccat |
3209278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University