View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16051_low_16 (Length: 253)
Name: NF16051_low_16
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 23345158 - 23345295
Alignment:
| Q |
116 |
tttagatgccttcactcatctttctaaaatttatgcacctataattactctcaagttaggaatttcaactaccatagtgatttcttctccaaaaatagcc |
215 |
Q |
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| T |
23345158 |
tttagatactttcactcacctttctaaaatttatggacctataattactctcaagttaggaatttcaaccaccatagtgatttcttctccaaaaatagcc |
23345257 |
T |
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| Q |
216 |
aaagaagcacttcacacatatgacatagttttttctag |
253 |
Q |
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| T |
23345258 |
aaagaagcacttcacacatatgacatagttttttctag |
23345295 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 23345101 - 23345158
Alignment:
| Q |
22 |
gaaccaaaacctctaaatcatcttccaagcttccagcaggtcctctcccttatcctat |
79 |
Q |
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| T |
23345101 |
gaaccaaaacctctaaatcatcttccaagcttccaccaggtcctcccccttatcctat |
23345158 |
T |
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