View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16051_low_18 (Length: 223)

Name: NF16051_low_18
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16051_low_18
NF16051_low_18
[»] chr1 (13 HSPs)
chr1 (48-206)||(5694841-5694999)
chr1 (46-152)||(46333951-46334058)
chr1 (34-158)||(9157324-9157449)
chr1 (46-129)||(33219599-33219683)
chr1 (34-128)||(45728301-45728396)
chr1 (37-95)||(37155063-37155121)
chr1 (48-105)||(741555-741612)
chr1 (34-95)||(21630056-21630117)
chr1 (34-105)||(1091597-1091668)
chr1 (34-105)||(36290460-36290531)
chr1 (34-151)||(4609010-4609128)
chr1 (48-105)||(15220839-15220896)
chr1 (48-105)||(29371396-29371453)
[»] chr6 (8 HSPs)
chr6 (48-160)||(10521846-10521959)
chr6 (25-95)||(31654304-31654380)
chr6 (34-82)||(17750978-17751026)
chr6 (58-129)||(24618629-24618701)
chr6 (43-133)||(17750925-17751016)
chr6 (34-85)||(24587475-24587526)
chr6 (37-118)||(13043474-13043556)
chr6 (34-82)||(12343176-12343224)
[»] chr3 (12 HSPs)
chr3 (34-158)||(18321665-18321790)
chr3 (34-152)||(33689190-33689309)
chr3 (52-159)||(29031712-29031820)
chr3 (48-129)||(30476502-30476584)
chr3 (65-131)||(30904289-30904356)
chr3 (48-158)||(47677254-47677365)
chr3 (37-105)||(30734455-30734523)
chr3 (38-125)||(50524720-50524808)
chr3 (34-95)||(30580819-30580880)
chr3 (34-82)||(47492061-47492109)
chr3 (34-129)||(47492075-47492171)
chr3 (35-95)||(50549990-50550050)
[»] chr5 (14 HSPs)
chr5 (34-158)||(16439152-16439277)
chr5 (34-155)||(19598346-19598467)
chr5 (25-83)||(17849220-17849278)
chr5 (48-129)||(28818945-28819027)
chr5 (69-133)||(228399-228464)
chr5 (48-105)||(16802472-16802529)
chr5 (34-82)||(26662475-26662524)
chr5 (34-82)||(26934070-26934119)
chr5 (43-95)||(3180123-3180175)
chr5 (38-121)||(12913821-12913905)
chr5 (34-82)||(29699443-29699491)
chr5 (34-82)||(2093951-2093999)
chr5 (34-82)||(2953266-2953314)
chr5 (38-82)||(28818993-28819037)
[»] chr7 (8 HSPs)
chr7 (32-152)||(27028798-27028919)
chr7 (34-155)||(34854697-34854819)
chr7 (34-105)||(38975819-38975890)
chr7 (34-95)||(4290559-4290620)
chr7 (48-95)||(10419486-10419533)
chr7 (28-107)||(22764751-22764830)
chr7 (34-82)||(4290621-4290669)
chr7 (38-121)||(41945873-41945957)
[»] chr4 (16 HSPs)
chr4 (48-158)||(55089995-55090106)
chr4 (48-152)||(47404590-47404695)
chr4 (34-129)||(6271716-6271812)
chr4 (48-152)||(40789207-40789312)
chr4 (31-75)||(25818384-25818428)
chr4 (37-105)||(35682183-35682251)
chr4 (48-129)||(42375038-42375120)
chr4 (34-129)||(26186044-26186138)
chr4 (49-119)||(44379959-44380030)
chr4 (34-88)||(3862616-3862670)
chr4 (34-88)||(3871373-3871427)
chr4 (34-74)||(5048884-5048924)
chr4 (38-82)||(6271778-6271822)
chr4 (34-82)||(42375086-42375134)
chr4 (69-152)||(50384110-50384194)
chr4 (34-82)||(53954686-53954734)
[»] chr8 (6 HSPs)
chr8 (34-152)||(34229655-34229774)
chr8 (34-105)||(5667111-5667182)
chr8 (38-95)||(4958617-4958674)
chr8 (37-105)||(8796439-8796507)
chr8 (87-149)||(13470046-13470109)
chr8 (34-95)||(10086771-10086832)
[»] scaffold0586 (1 HSPs)
scaffold0586 (37-125)||(7079-7168)
[»] scaffold0536 (1 HSPs)
scaffold0536 (34-119)||(4930-5013)
[»] chr2 (9 HSPs)
chr2 (46-129)||(14229381-14229464)
chr2 (32-158)||(15011292-15011419)
chr2 (34-105)||(29508744-29508815)
chr2 (34-105)||(9173034-9173105)
chr2 (48-82)||(14464583-14464617)
chr2 (38-91)||(8534164-8534217)
chr2 (45-82)||(8534222-8534259)
chr2 (37-82)||(14229370-14229415)
chr2 (34-82)||(33018621-33018669)
[»] scaffold0180 (1 HSPs)
scaffold0180 (34-82)||(19136-19184)
[»] scaffold0016 (1 HSPs)
scaffold0016 (34-82)||(49717-49765)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 5694999 - 5694841
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatttaatattgtgattgactaatgtcatcaaattctacgtcaccc 147  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||||| ||||||| |||| |||| ||||| |    
T  5694999 tgacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcatttaatattgtgattgaccaatgtcaccaaactctatgtcactc 5694900  T
Q  148 aagtgttatccgacggtgtgagaggtgaaattaggttgcacgactcagcatggagccca 206  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5694899 aagtgttatccgaaagtgtgagaggtgaaattaggttgcacgactcagcatggagccca 5694841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 46334058 - 46333951
Alignment:
Q  46 gatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtca 144  Q
    ||||||||||  |||| ||||||||||||| ||||||||||||||||||| | ||||||| | | |||||||||| | ||||||||| || |||| ||||    
T  46334058 gatgacattgaccaatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtgattggccaatgtcatccaactctatgtca 46333959  T
Q  145 cccaagtg 152  Q
    ||||||||    
T  46333958 cccaagtg 46333951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 9157324 - 9157449
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatca 132  Q
    |||||||| |||| | ||||||  |||| ||||||||||||| ||||||||| |||||||||   ||||||| | |||||||||||||  ||||||| |     
T  9157324 ttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtgattgatcaatgtcaacc 9157423  T
Q  133 aattctacgtcacccaagtgttatcc 158  Q
    || |||| ||||| |||||| |||||    
T  9157424 aactctatgtcacacaagtgctatcc 9157449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 33219599 - 33219683
Alignment:
Q  46 gatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    |||||||||| ||||| ||||||| ||||| ||||||||||||||||||| | ||||||| | | |||||||||||  |||||||    
T  33219599 gatgacattgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatcaatgtca 33219683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 45728301 - 45728396
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtc 128  Q
    ||||||||||||| ||| ||||  |||| ||||| ||||||| ||||||||| ||||||||| | ||||||| | | |||||||||||| ||||||    
T  45728301 ttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtgattgaccaatgtc 45728396  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 37155063 - 37155121
Alignment:
Q  37 ggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    ||||| |||| ||||||||| |||| ||||||||||||| ||||||||| |||||||||    
T  37155063 ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctcttt 37155121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 741612 - 741555
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    ||||||||||| || ||||||||||||| ||||||||| ||||||||| | |||||||    
T  741612 tgacattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcatt 741555  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 21630056 - 21630117
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    |||||||| |||| ||||||||  |||| ||||||||||||| ||||||||| |||||||||    
T  21630056 ttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctcttt 21630117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 1091668 - 1091597
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    ||||||||||||| |||| |||  |||| |||||||||||||  |||||||| ||||||||| | |||||||    
T  1091668 ttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 1091597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 36290531 - 36290460
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    |||||||| |||| || |||||  |||| |||||||||||||| |||||||| ||||||||| | |||||||    
T  36290531 ttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcatt 36290460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 4609010 - 4609128
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatca 132  Q
    |||||||| || | ||||||||  | || |||||||||||||  |||||||| ||||||||| | ||||||| | | |||||||||||| ||||||| |     
T  4609010 ttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcaccc 4609109  T
Q  133 aattctacgtcacccaagt 151  Q
    || |||| ||||| |||||    
T  4609110 aactctatgtcacacaagt 4609128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 15220839 - 15220896
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    |||||||||||||| || || ||||||| ||||||||| ||||||||| | |||||||    
T  15220839 tgacattggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcatt 15220896  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 29371396 - 29371453
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    ||||||||| |||| |||||||||||||  |||||||| ||||||||| | |||||||    
T  29371396 tgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcatt 29371453  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 10521959 - 10521846
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacc 146  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||||||||| ||||||||| | | |||||||||| | ||||||| |||| |||| ||||||    
T  10521959 tgacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtgattggccaatgtcaccaaactctatgtcacc 10521860  T
Q  147 caagtgttatccga 160  Q
    |||||| |||||||    
T  10521859 caagtgctatccga 10521846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 31654304 - 31654380
Alignment:
Q  25 gggtagcacttgggtgatattga------tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    |||||||||||||||||||| ||      ||||||||| |||| ||||||||||||| ||||||||| |||||||||    
T  31654304 gggtagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctcttt 31654380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 17751026 - 17750978
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    ||||||||||||||||||||||| | || ||||||||||||| ||||||    
T  17751026 ttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtg 17750978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 24618701 - 24618629
Alignment:
Q  58 caattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    |||| ||||||||||||| ||||||||| ||||||||| ||||||||| | | |||||||||||  |||||||    
T  24618701 caatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaatgtca 24618629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 17750925 - 17751016
Alignment:
Q  43 attgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaa 133  Q
    |||| |||||||||||||| |||||||||||||  |||| ||| ||||||||| | ||||||| | | |||||||| | | |||||||||||    
T  17750925 attggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtgatcggccaatgtcatcaa 17751016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 24587475 - 24587526
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgttt 85  Q
    |||||||| |||  |||||||||||||| ||||||||||||| |||||||||    
T  24587475 ttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgttt 24587526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 13043474 - 13043556
Alignment:
Q  37 ggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgatt 118  Q
    ||||||||||  || ||||||||||   ||||||||||| ||||||||| ||||||||| | ||||||| | |||||||||||    
T  13043474 ggtgatattggcgatattggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtgatt 13043556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 12343224 - 12343176
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||| ||||||||| |||| ||||||||||||| ||||||    
T  12343224 ttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtg 12343176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 18321665 - 18321790
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatca 132  Q
    ||||||||||||| |||||||||||||| ||||||||||||   |||||||||||||| ||| | | ||||| | | |||||||||||| |||||||||     
T  18321665 ttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgtgattgaccaatgtcatcc 18321764  T
Q  133 aattctacgtcacccaagtgttatcc 158  Q
    || |||| |||| |||||||||||||    
T  18321765 aactctatgtcatccaagtgttatcc 18321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 33689190 - 33689309
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatca 132  Q
    |||||||| |||||||| |||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||| | | |||||||||| | ||||||| |     
T  33689190 ttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccc 33689289  T
Q  133 aattctacgtcacccaagtg 152  Q
    || || | ||||||||||||    
T  33689290 aactcaatgtcacccaagtg 33689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 29031820 - 29031712
Alignment:
Q  52 attggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacccaag 150  Q
    ||||||||||||||||||||||||  |||||||| ||||||||| | ||||||| | | |||||||||||| ||| ||| | || |||| ||||  ||||    
T  29031820 attggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacctaactctatgtcatgcaag 29031721  T
Q  151 tgttatccg 159  Q
    |||||||||    
T  29031720 tgttatccg 29031712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 30476584 - 30476502
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||| | | |||||||||| | |||||||    
T  30476584 tgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtca 30476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 30904289 - 30904356
Alignment:
Q  65 aatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatc 131  Q
    ||||||||||| ||||||||| ||||||||||||||  ||| | ||||||||||||| ||||||||||    
T  30904289 aatgtcacaatgcttgtgtttctctctcttttataaatattgtgatattgtgattgattaatgtcatc 30904356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 47677365 - 47677254
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacc 146  Q
    |||||||| ||||| |||||||||||||  |||||||| ||||||||| | ||||||| | | |||||||| |   ||||||| |||| |||| |||||     
T  47677365 tgacattgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgatcggtcaatgtcaccaaactctatgtcaca 47677266  T
Q  147 caagtgttatcc 158  Q
    ||||||||||||    
T  47677265 caagtgttatcc 47677254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 30734523 - 30734455
Alignment:
Q  37 ggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    ||||| |||| ||||||||| |||| ||||||||| ||||||||||||| ||| ||||| | |||||||    
T  30734523 ggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcatt 30734455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 50524720 - 50524808
Alignment:
Q  38 gtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcat-ttaatattgtgattgactaat 125  Q
    |||||| |||||||||||  |||| | |||||||||||  |||||||| ||||||||| | ||||||  ||| ||||||||||||||||    
T  50524720 gtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtgattgactaat 50524808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 30580880 - 30580819
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    |||||||| |||  |||||||||||||| ||||||||||| | ||||||||| | |||||||    
T  30580880 ttgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctcttt 30580819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 47492061 - 47492109
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||| ||||||||| |||| ||||||||||||| ||||||    
T  47492061 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 47492109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 47492171 - 47492075
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    |||||||| |||| | | ||||| |||| ||||||||||||| ||||||||| ||||| ||| | ||||||| | | |||||||||| | |||||||    
T  47492171 ttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtgattggccaatgtca 47492075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 50549990 - 50550050
Alignment:
Q  35 tgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    |||||||||||| ||||||||  |||| ||||| | ||||| ||||||||| |||||||||    
T  50549990 tgggtgatattggtgacattgaccaatcacaatattacaatgcttgtgtttctctctcttt 50550050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 16439152 - 16439277
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatca 132  Q
    |||||| |||||| |||||||||||||| ||||||||||||| ||||||||| ||||||||| | ||||||| | | |||||||||||  ||||||| |     
T  16439152 ttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcaccc 16439251  T
Q  133 aattctacgtcacccaagtgttatcc 158  Q
    || |||| ||||| ||| ||||||||    
T  16439252 aactctatgtcacacaaatgttatcc 16439277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 19598346 - 19598467
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatttaatattgtgattgactaatgtcatcaa 133  Q
    |||||| | |||| |||||||||||||| |||||  |||||| ||||||||| ||||||||| | |||||||| | ||| ||||||  |||||||| | |    
T  19598346 ttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatttgacattatgattggttaatgtcaccca 19598445  T
Q  134 attctacgtcacccaagtgtta 155  Q
    | |||| |||||||||||||||    
T  19598446 actctatgtcacccaagtgtta 19598467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 17849278 - 17849220
Alignment:
Q  25 gggtagcacttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgt 83  Q
    |||||||||||||||||||||| |||||||||||||| ||||| || |||| |||||||    
T  17849278 gggtagcacttgggtgatattggtgacattggtcaatcacaatatcgcaatgcttgtgt 17849220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 28818945 - 28819027
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||| | ||||||| | | ||| |||||||| |||||||    
T  28818945 tgacattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtgacattatgattgaccaatgtca 28819027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 228399 - 228464
Alignment:
Q  69 tcacaatacttgtgtttttctctcttttataagca-tttaatattgtgattgactaatgtcatcaa 133  Q
    |||||||| |||||||||||||||||||| ||||| ||| | |||||||||||| ||| |||||||    
T  228399 tcacaatatttgtgtttttctctcttttacaagcattttgacattgtgattgacaaatctcatcaa 228464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 16802472 - 16802529
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    ||||||||| |||| ||||||| |||||| |||||||| ||||||||||| |||||||    
T  16802472 tgacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcatt 16802529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 26662524 - 26662475
Alignment:
Q  34 ttgggtgatattgatgacattggtc-aattacaatgtcacaatacttgtg 82  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  26662524 ttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtg 26662475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 26934119 - 26934070
Alignment:
Q  34 ttgggtgatattgatgacattggtc-aattacaatgtcacaatacttgtg 82  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  26934119 ttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtg 26934070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 3180175 - 3180123
Alignment:
Q  43 attgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    |||| |||||||||||||| |||||| |||||| ||||||||| |||||||||    
T  3180175 attggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctcttt 3180123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 12913821 - 12913905
Alignment:
Q  38 gtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgac 121  Q
    |||| |||| ||||||||| |||| ||||||||||||| ||||||| | ||||||||| | ||||||| | | ||||||||||||    
T  12913821 gtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatgacattgtgattgac 12913905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 29699491 - 29699443
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    ||||||||||||| ||||||||| |||| ||||||||||||| ||||||    
T  29699491 ttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtg 29699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 2093951 - 2093999
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||| ||||||    
T  2093951 ttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtg 2093999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 2953314 - 2953266
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||| ||||||||| |||| ||||||||||||| ||||||    
T  2953314 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 2953266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 28819037 - 28818993
Alignment:
Q  38 gtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    ||||||||| |||||||||||||| | ||||||||||| ||||||    
T  28819037 gtgatattggtgacattggtcaatcataatgtcacaatgcttgtg 28818993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 27028919 - 27028798
Alignment:
Q  32 acttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcat 130  Q
    ||||||||||| ||| |||||||||||||| |||||||||||||  |||||||| ||||||||| | ||||||| | | |||||||||| | ||||| |     
T  27028919 acttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtgattgtccaatgttac 27028820  T
Q  131 caaattctacgtcacccaagtg 152  Q
    | || |||| ||||||||||||    
T  27028819 ccaactctatgtcacccaagtg 27028798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 34854819 - 34854697
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatca 132  Q
    |||||||| |||| |||||||||||||| |||||| ||||||  |||||||| | ||||||| | ||||||| |   |||||||||| | ||||||| ||    
T  34854819 ttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgtgattggccaatgtcacca 34854720  T
Q  133 aattctacgtcacccaagtgtta 155  Q
    || |||| |||||||||||||||    
T  34854719 aactctatgtcacccaagtgtta 34854697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 38975819 - 38975890
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    |||||||| |||| | |||||||||||| |||||| |||||| ||||||||| ||||||||| | |||||||    
T  38975819 ttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcatt 38975890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 4290559 - 4290620
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    ||||||||||||| ||| |||||||||| |||||| |||||| || |||||| |||||||||    
T  4290559 ttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctcttt 4290620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 10419486 - 10419533
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    |||||||||||||| | ||||| ||||||||||||||| |||||||||    
T  10419486 tgacattggtcaatcataatgttacaatacttgtgtttctctctcttt 10419533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 22764830 - 22764751
Alignment:
Q  28 tagcacttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcattta 107  Q
    ||||||||  |||| |||| ||| ||||| |||| |||||||||||||  |||||||| ||||||||| | |||||||||    
T  22764830 tagcacttatgtgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattta 22764751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 4290669 - 4290621
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||| ||||||||| |||| ||||||||||||| ||||||    
T  4290669 ttgggtgacattggtgacattggccaatcacaatgtcacaattcttgtg 4290621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 41945873 - 41945957
Alignment:
Q  38 gtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgac 121  Q
    |||| |||||||||||| |||||| | ||||||| |||  ||| |||||| ||||||| | ||||||| ||| ||||||||||||    
T  41945873 gtgacattgatgacattagtcaatcataatgtcataatgtttgcgtttttttctctttcacaagcattgtaacattgtgattgac 41945957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 55090106 - 55089995
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacc 146  Q
    |||||||||||||| ||||||||||||| ||||||| | ||||||||| | ||||||| | | |||||||||||| |||||||   || |||| ||||||    
T  55090106 tgacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtcacc 55090007  T
Q  147 caagtgttatcc 158  Q
    |||||| |||||    
T  55090006 caagtgatatcc 55089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 47404695 - 47404590
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacc 146  Q
    |||||||||||||| |||||| |||||| |||| |||| ||||||||| | ||||||| | | |||||||||||| ||||||| | || |||| ||||||    
T  47404695 tgacattggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacc 47404596  T
Q  147 caagtg 152  Q
    ||||||    
T  47404595 caagtg 47404590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 6271716 - 6271812
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    ||||||||||||| ||||||||| |||| |||||| |||||| ||||||||| ||||||||| | ||||||| | | |||||||||| | |||||||    
T  6271716 ttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtca 6271812  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 40789207 - 40789312
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacc 146  Q
    ||||||||| |||| |||||||||||||  |||||||| ||||||||| | ||||||| | | |||||||||| | ||| ||| |||| |||| ||||||    
T  40789207 tgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatatcaccaaactctatgtcacc 40789306  T
Q  147 caagtg 152  Q
    ||||||    
T  40789307 caagtg 40789312  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 25818384 - 25818428
Alignment:
Q  31 cacttgggtgatattgatgacattggtcaattacaatgtcacaat 75  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  25818384 cacttgggtgacattgatgacattggtcaatcacaatgtcacaat 25818428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 35682183 - 35682251
Alignment:
Q  37 ggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    |||||||||| ||||||||| |||| ||||||||| ||||||||||||| ||| ||||| | |||||||    
T  35682183 ggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcatt 35682251  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 42375038 - 42375120
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    |||||||||||||| |||||| |||||| ||||||||| ||||||||| | ||||||| | | |||||||||||  |||||||    
T  42375038 tgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtca 42375120  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 26186138 - 26186044
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    |||||| | |||||||||||||| |||| ||||| ||||||| ||||||  ||||||||||| | ||||||| | | |||||||||||| |||||||    
T  26186138 ttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtg--tttctctctttcacaagcattgtgacattgtgattgaccaatgtca 26186044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 44379959 - 44380030
Alignment:
Q  49 gacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattg 119  Q
    |||||||| |||||| ||||||||||| |||| |||| ||||| ||||||||| ||| ||| ||||||||||    
T  44379959 gacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaacattgtgattg 44380030  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 3862670 - 3862616
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttc 88  Q
    |||||||| |||| ||||||||| |||| |||||| |||||| ||||||||||||    
T  3862670 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttttc 3862616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 3871427 - 3871373
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttc 88  Q
    |||||||| |||| ||||||||| |||| |||||| |||||| ||||||||||||    
T  3871427 ttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttttc 3871373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 5048924 - 5048884
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaa 74  Q
    |||||||| ||||||||||||||||||| | ||||||||||    
T  5048924 ttgggtgacattgatgacattggtcaatcataatgtcacaa 5048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 6271822 - 6271778
Alignment:
Q  38 gtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    ||||||||| ||||||||| |||| ||||||||||||| ||||||    
T  6271822 gtgatattggtgacattggccaatcacaatgtcacaatgcttgtg 6271778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 42375134 - 42375086
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||| |||||||| ||||| ||||||||||||| ||||||    
T  42375134 ttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtg 42375086  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 50384194 - 50384110
Alignment:
Q  69 tcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacccaagtg 152  Q
    ||||||| ||||||||| ||||||||| | ||||||| | | |||||||||| | ||||||| | || |||| ||||||||||||    
T  50384194 tcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtg 50384110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 53954734 - 53954686
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||| ||||||||  |||||||||||||||||| ||||||    
T  53954734 ttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtg 53954686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 34229655 - 34229774
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcatca 132  Q
    |||||||| |||  ||||||  |||||| ||||||||| ||| ||||||||| ||||||||| | ||||||| | |||||||||||||| ||||||| |     
T  34229655 ttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattgaccaatgtcacct 34229754  T
Q  133 aattctacgtcacccaagtg 152  Q
    || |||| ||||| ||||||    
T  34229755 aactctatgtcacacaagtg 34229774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 5667111 - 5667182
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    |||| ||| |||| |||||||||||||| ||||||||||||| ||||| ||| ||||||||| | |||||||    
T  5667111 ttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcatt 5667182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 4958617 - 4958674
Alignment:
Q  38 gtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    ||||||||||||||||||| |||| ||||||||| |||  |||||||| |||||||||    
T  4958617 gtgatattgatgacattggccaatcacaatgtcataatgtttgtgtttctctctcttt 4958674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 8796439 - 8796507
Alignment:
Q  37 ggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    |||||||||  ||| |||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||||    
T  8796439 ggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcatt 8796507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 13470046 - 13470109
Alignment:
Q  87 tctctcttttataagcatt-taatattgtgattgactaatgtcatcaaattctacgtcacccaa 149  Q
    ||||||||||||||| ||| ||| |||||||||||| ||||||| ||||| ||| |||||||||    
T  13470046 tctctcttttataagtattgtaacattgtgattgaccaatgtcaccaaatgctatgtcacccaa 13470109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 10086771 - 10086832
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttt 95  Q
    |||||||| |||  |||||||||||||| ||||||||| |||  |||||||| |||||||||    
T  10086771 ttgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctcttt 10086832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 7168 - 7079
Alignment:
Q  37 ggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaat 125  Q
    ||||| |||| ||||||||| |||| ||||||||||||| ||||||||| ||||||||| | ||||||| | | |||||||||| |||||    
T  7168 ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggctaat 7079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 5013 - 4930
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattg 119  Q
    ||||||||||||| ||| |||||||||||||||||| ||   |||| ||||| ||||||||| | ||||||| ||||||||||||||    
T  5013 ttgggtgatattggtgatattggtcaattacaatgttac---acttatgtttgtctctctttcacaagcattgtaatattgtgattg 4930  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 14229464 - 14229381
Alignment:
Q  46 gatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtca 129  Q
    ||||||||||| |||| ||||||||||||| ||||||||| ||||||||| | ||||||| | | |||||||||||| |||||||    
T  14229464 gatgacattgg-caatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtca 14229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 15011292 - 15011419
Alignment:
Q  32 acttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt-taatattgtgattgactaatgtcat 130  Q
    |||||||||| |||| ||| ||||| |||| |||||| ||||||  |||||||| ||||||||| | ||||||| | | |||||||||| | |||||||     
T  15011292 acttgggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcac 15011391  T
Q  131 caaattctacgtcacccaagtgttatcc 158  Q
      || |||| ||||||||||| ||||||    
T  15011392 tcaactctatgtcacccaagtattatcc 15011419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 29508815 - 29508744
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    ||||||||||||| ||||||||| |||| |||||| | |||| ||||||||| ||||||||| | |||||||    
T  29508815 ttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcatt 29508744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 9173105 - 9173034
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctctcttttataagcatt 105  Q
    |||||||| |||| ||| ||||| |||| |||||| |||||| ||||| ||| ||| |||||||||||||||    
T  9173105 ttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttttataagcatt 9173034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 14464583 - 14464617
Alignment:
Q  48 tgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||||||||| ||||||||||||||||||||    
T  14464583 tgacattggtcaatcacaatgtcacaatacttgtg 14464617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 8534164 - 8534217
Alignment:
Q  38 gtgatattgatgacattggtcaattacaatgtcacaatacttgtgtttttctct 91  Q
    |||| ||||||||||||| ||||||||||||| | |||| |||||||| |||||    
T  8534164 gtgacattgatgacattgatcaattacaatgtaaaaatatttgtgtttctctct 8534217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 8534259 - 8534222
Alignment:
Q  45 tgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  8534259 tgatgatattggtcaattacaatgtcacaattcttgtg 8534222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 14229370 - 14229415
Alignment:
Q  37 ggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    ||||| |||| |||||||||||||| ||||||||||||| ||||||    
T  14229370 ggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtg 14229415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 33018669 - 33018621
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||| ||| |||||||||| ||||||||||||| ||||||    
T  33018669 ttgggtgacattggtgatattggtcaatcacaatgtcacaatgcttgtg 33018621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 19136 - 19184
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||||||| |||| ||||| ||||||||||||| ||||||    
T  19136 ttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtg 19184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 49717 - 49765
Alignment:
Q  34 ttgggtgatattgatgacattggtcaattacaatgtcacaatacttgtg 82  Q
    |||||||| |||||||||||||  |||| ||||||||||||| ||||||    
T  49717 ttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtg 49765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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