View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16051_low_2 (Length: 419)
Name: NF16051_low_2
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 40797079 - 40796694
Alignment:
| Q |
15 |
caaaggcccttgtgcttctaatgacaattaaaaacatatctatgcgccaaggtttacaaccctctttgaatatcacattgtccactctatggtttagact |
114 |
Q |
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| T |
40797079 |
caaaggcccttgtgcttctaatgacaattaaaaacatatctatgcggcaaggtatacaaccctctttgaatatcacattgtccactctatggtttagact |
40796980 |
T |
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| Q |
115 |
tagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaactacagtggtttaatcttcaattccatcgaaaagtagccagcatttta |
214 |
Q |
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| T |
40796979 |
tagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaaccacagtggtttaatcttcaattccatcgaaaagtagccagcatttta |
40796880 |
T |
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| Q |
215 |
gaacttcaagcaatttgcccaaccttgaaacctatagattaaactcaatataactaaaagattatcaacattatagttcctgtcgtggtcctattgctat |
314 |
Q |
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| T |
40796879 |
gaacttcaagcaatttgcccaaccttgaaacctatagattaaactcaatataattaaaagattatcaacattatagttcctgtcgtggtcctattgctat |
40796780 |
T |
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| Q |
315 |
cacaaaagaaaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggata |
400 |
Q |
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| T |
40796779 |
cacaaaagaaaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggata |
40796694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 377
Target Start/End: Complemental strand, 18307703 - 18307559
Alignment:
| Q |
226 |
aatttgcccaaccttgaaacctatagattaaactcaatataactaaaagattatcaacattatagttcctgtcgtggtcctattgctatcac--aaaaga |
323 |
Q |
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| T |
18307703 |
aatttgcccaacgtttaaacatatagattaagctcaatataattaaaagatgat---------agttcctggcagggtcctattgctatcaatgaaaaga |
18307613 |
T |
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| Q |
324 |
aaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaa |
377 |
Q |
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| T |
18307612 |
aaacaatgccctaaagtaatgaaagcacatgacaccgaaatacaaaacaacaaa |
18307559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 783274 - 783351
Alignment:
| Q |
301 |
ggtcctattgctatcacaaaagaaaacaacgccctaaaagaatgaaagcacatgac-accagaatacaaaacaacaaa |
377 |
Q |
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| T |
783274 |
ggtcctattgctatcacaaaggaaaacaacgccggaaaagaatgaaagcacatgacaacgaaaatacaaaacaacaaa |
783351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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