View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16051_low_5 (Length: 364)

Name: NF16051_low_5
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16051_low_5
NF16051_low_5
[»] chr1 (9 HSPs)
chr1 (18-364)||(29474414-29474762)
chr1 (60-194)||(29454659-29454793)
chr1 (60-145)||(29421870-29421955)
chr1 (282-341)||(29422045-29422104)
chr1 (86-145)||(29444668-29444727)
chr1 (295-361)||(29444504-29444570)
chr1 (235-293)||(29421958-29422017)
chr1 (328-364)||(29473625-29473661)
chr1 (18-59)||(29444748-29444789)
[»] chr2 (2 HSPs)
chr2 (101-217)||(11988837-11988953)
chr2 (282-359)||(12020019-12020094)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 29474762 - 29474414
Alignment:
Q  18 agttaagttatccattgcagttacaaagtcaaggatgaagcatttcagggtagaagagattgaagacaggtcacacaattagtagtcaagtaggttactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29474762 agttaagttatccattgcagttacaaagtcaaggatgaagcatttcagggtagaagagattgaagacaggtcacacaattagtagtcaagtaggttactt 29474663  T
Q  118 gccaatagttttttcacaagaaaacaaagcaaaaatacaattgtaaggctgccaaatgtagaagttgcattacagttgatgataaaagcatattaacatg 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29474662 gccaatagttttttcacaagaaaacaaagcaaaaatacaattataaggctgccaaatgtaaaagttgcattacagttgatgataaaagcatattaacatg 29474563  T
Q  218 ttcttt--nnnnnnnnnngcatactaacatgcatgcatatgtacaaaattacaaagatactaaaagtttcaacactttcttacacctaaacaaacatata 315  Q
    ||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29474562 ttctttcaaaaaaaaaaagcatactaacatgcatgcatatgtacaaaattacaaagatactaaaagtttcaacactttcttacacctaaacaaacatata 29474463  T
Q  316 ggccgtttttgtttgcattacttatagcaagatcctagcaattacaaac 364  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29474462 ggccgtttttgtttgcattacttatagcaagatactagcaattacaaac 29474414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 29454793 - 29454659
Alignment:
Q  60 tttcagggtagaagagattgaagacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaagcaaaaataca--- 156  Q
    ||||||||| ||||||| ||||||  |||||||||| ||||   ||||||||||||  |||||||||||||||||||| ||||||||||||||||||       
T  29454793 tttcagggttgaagagaatgaagatgggtcacacaaatagt---caagtaggttacccgccaatagttttttcacaagcaaacaaagcaaaaatacagtt 29454697  T
Q  157 attgtaaggctgccaaatgtagaagttgcattacagtt 194  Q
     |||||| | |||  |||||| ||||||||||||||||    
T  29454696 cttgtaatgttgcggaatgtaaaagttgcattacagtt 29454659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 29421870 - 29421955
Alignment:
Q  60 tttcagggtagaagagattgaagacaggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaa 145  Q
    ||||| ||| ||||||||||||||  || ||| ||||||| | ||||||||||||||||||||||||||| ||||||| |||||||    
T  29421870 tttcatggttgaagagattgaagatgggccacgcaattagcattcaagtaggttacttgccaatagttttctcacaagcaaacaaa 29421955  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 29422045 - 29422104
Alignment:
Q  282 tttcaacactttcttacacctaaacaaacatataggccgtttttgtttgcattacttata 341  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||    
T  29422045 tttcaacactttcttacacctaaacagacatatatgccatttttctttgcattacttata 29422104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 29444727 - 29444668
Alignment:
Q  86 ggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaa 145  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||    
T  29444727 ggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaa 29444668  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 29444570 - 29444504
Alignment:
Q  295 ttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatcctagcaattaca 361  Q
    ||||||||||||| ||||||| ||  ||||| |||| ||||||||||||| ||||||||||||||||    
T  29444570 ttacacctaaacagacatatatgcaatttttctttgaattacttatagcaggatcctagcaattaca 29444504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 29421958 - 29422017
Alignment:
Q  235 catactaacatgcatgcatatgtacaaaattacaaagatact-aaaagtttcaacacttt 293  Q
    |||| |||||||||||||||| |||||||| ||||||||| | |||||||||||||||||    
T  29421958 catattaacatgcatgcatatatacaaaatcacaaagataataaaaagtttcaacacttt 29422017  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 29473661 - 29473625
Alignment:
Q  328 ttgcattacttatagcaagatcctagcaattacaaac 364  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29473661 ttgcattacttatagcaagatactagcaattacaaac 29473625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 29444789 - 29444748
Alignment:
Q  18 agttaagttatccattgcagttacaaagtcaaggatgaagca 59  Q
    ||||||||||||||| |||||||||||||||  |||||||||    
T  29444789 agttaagttatccatggcagttacaaagtcagtgatgaagca 29444748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 11988953 - 11988837
Alignment:
Q  101 agtcaagtaggttacttgccaatagttttttcacaagaaaacaaagcaaaaatacaat---tgtaaggctgccaaatgtagaagttgcattacagttgat 197  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||||| ||||   ||||||| ||||||||||  |||| ||||||||||||||    
T  11988953 agtcaagtaggttacttgccaatag-atttccacaagaaaacaaagcaaaaatgcaattcgtgtaaggttgccaaatgt--aagtggcattacagttgat 11988857  T
Q  198 gataaaagcatattaacatg 217  Q
    | ||||  ||||||||||||    
T  11988856 ggtaaagccatattaacatg 11988837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 12020094 - 12020019
Alignment:
Q  282 tttcaacactttcttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatcctagcaatta 359  Q
    |||||||||||||||||||||||||||||||||| ||| | ||  |||| ||| ||||||||| || |||| ||||||    
T  12020094 tttcaacactttcttacacctaaacaaacatatatgccatctt--tttgtattgcttatagcaggaacctaacaatta 12020019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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