View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16051_low_6 (Length: 362)

Name: NF16051_low_6
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16051_low_6
NF16051_low_6
[»] chr2 (9 HSPs)
chr2 (191-347)||(1402943-1403099)
chr2 (191-347)||(1399248-1399403)
chr2 (14-130)||(1403161-1403277)
chr2 (14-122)||(1399464-1399572)
chr2 (14-103)||(410180-410269)
chr2 (235-289)||(974971-975025)
chr2 (14-99)||(821078-821163)
chr2 (235-289)||(965702-965756)
chr2 (235-276)||(409824-409865)
[»] chr3 (1 HSPs)
chr3 (27-99)||(45810550-45810622)
[»] chr6 (2 HSPs)
chr6 (14-86)||(10116798-10116870)
chr6 (225-276)||(10117267-10117318)
[»] chr7 (4 HSPs)
chr7 (230-276)||(1446151-1446197)
chr7 (228-276)||(1459552-1459600)
chr7 (41-93)||(12105209-12105261)
chr7 (58-92)||(1446105-1446139)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 191 - 347
Target Start/End: Complemental strand, 1403099 - 1402943
Alignment:
Q  191 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403099 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 1403000  T
Q  291 ccatgataggttatatctgctttgttcaacctttttaagcttgagcatcttaattgt 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1402999 ccatgatcggttatatctgctttgttcaacctttttaagcttgagcatcttaattgt 1402943  T

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Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 191 - 347
Target Start/End: Complemental strand, 1399403 - 1399248
Alignment:
Q  191 tatcacattattctttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 290  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1399403 tatcacattatt-tttttcattggcatgcatcatcaaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaa 1399305  T
Q  291 ccatgataggttatatctgctttgttcaacctttttaagcttgagcatcttaattgt 347  Q
     |||| | ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  1399304 tcatggtcggttatatctgctttgttcaacctttttaagcttgagccgcttaattgt 1399248  T

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Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 1403277 - 1403161
Alignment:
Q  14 agggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattaggtggacaataa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403277 agggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattaggtggacaataa 1403178  T
Q  114 ccctacatttgaaagaa 130  Q
    |||||||||||||||||    
T  1403177 ccctacatttgaaagaa 1403161  T

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Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 1399572 - 1399464
Alignment:
Q  14 agggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattaggtggacaataa 113  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1399572 agggcaatggtggagcacttgtacaattatatcacagctatagttgagcaccagatgagtcaaattatggaatgtagaaaagtcattaggtggacaataa 1399473  T
Q  114 ccctacatt 122  Q
    |||||||||    
T  1399472 ccctacatt 1399464  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 410269 - 410180
Alignment:
Q  14 agggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcattagg 103  Q
    ||||||||||| |||||||||||||| |||||| | ||  ||||||| ||||| |||  ||||||||||||||||||| |||||||||||    
T  410269 agggcaatggtggagcacttgtacaactatatccccgtcgtagttgatcaccaaatggatcaaattatggaatgtagggaagtcattagg 410180  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 974971 - 975025
Alignment:
Q  235 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca 289  Q
    |||||| ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  974971 atagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagca 975025  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 821163 - 821078
Alignment:
Q  14 agggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcat 99  Q
    ||||||||||| ||||||   ||||| |||||  || | ||||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  821163 agggcaatggtggagcacccatacaactatattccaatcatagttgtgcaccaaatgggtcaaattatgaaatgtaggaaagtcat 821078  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 965702 - 965756
Alignment:
Q  235 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagca 289  Q
    ||||||||||| ||| ||| |||| |||||||||||||||||||  |||||||||    
T  965702 atagttgtatgtgtaaaaattccaaatttgaaagtgatttcaccggaaaatagca 965756  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 409865 - 409824
Alignment:
Q  235 atagttgtatgcgtagaaactccacatttgaaagtgatttca 276  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  409865 atagttgtatacgtagaaactccaaatttgaaagcgatttca 409824  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 45810550 - 45810622
Alignment:
Q  27 agcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaaagtcat 99  Q
    ||||||||||||| |||||| || | |||||||| ||||| |||||||||||||| |||||||||||||||||    
T  45810550 agcacttgtacaactatatcccaatcatagttgaccaccaaatgagtcaaattattgaatgtaggaaagtcat 45810622  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 10116798 - 10116870
Alignment:
Q  14 agggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatggaat 86  Q
    ||||||||||| |||||||||||||| |||||| || | ||||  |||||||| |||||||||||||||||||    
T  10116798 agggcaatggtggagcacttgtacaactatatcccaatcatagaggagcaccaaatgagtcaaattatggaat 10116870  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 10117267 - 10117318
Alignment:
Q  225 caaaccttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 276  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||| |||||    
T  10117267 caaaccttgaatagttgtatgcctagaaactccaaatttgaaagtgctttca 10117318  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 1446151 - 1446197
Alignment:
Q  230 cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 276  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  1446151 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca 1446197  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 1459552 - 1459600
Alignment:
Q  228 accttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 276  Q
    |||||| |||||| |||| |||||||||||||||||||||||| |||||    
T  1459552 accttggatagttttatgtgtagaaactccacatttgaaagtgctttca 1459600  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 12105261 - 12105209
Alignment:
Q  41 tatatcacagttatagttgagcaccagatgagtcaaattatggaatgtaggaa 93  Q
    |||||| || ||||||  |||||||| ||||||||||||||||||||||||||    
T  12105261 tatatcccaattatagcagagcaccaaatgagtcaaattatggaatgtaggaa 12105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 1446105 - 1446139
Alignment:
Q  58 tgagcaccagatgagtcaaattatggaatgtagga 92  Q
    ||||||||| |||||||||||||||||||||||||    
T  1446105 tgagcaccaaatgagtcaaattatggaatgtagga 1446139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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