View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16051_low_7 (Length: 351)

Name: NF16051_low_7
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16051_low_7
NF16051_low_7
[»] chr2 (12 HSPs)
chr2 (15-324)||(11312052-11312362)
chr2 (15-192)||(7395722-7395889)
chr2 (31-238)||(7384792-7384988)
chr2 (35-301)||(23453509-23453780)
chr2 (224-301)||(18557456-18557533)
chr2 (153-301)||(25232095-25232244)
chr2 (116-302)||(19084540-19084730)
chr2 (178-302)||(44117300-44117428)
chr2 (205-301)||(16443196-16443293)
chr2 (205-303)||(26195476-26195575)
chr2 (153-258)||(25225790-25225896)
chr2 (225-299)||(17830674-17830749)
[»] chr5 (10 HSPs)
chr5 (15-302)||(28663553-28663841)
chr5 (15-257)||(19699347-19699594)
chr5 (15-302)||(17935464-17935752)
chr5 (162-302)||(29742059-29742198)
chr5 (154-201)||(24228309-24228356)
chr5 (192-301)||(29948340-29948450)
chr5 (159-240)||(18079943-18080023)
chr5 (15-51)||(17945752-17945788)
chr5 (213-302)||(25590113-25590203)
chr5 (168-236)||(40786726-40786794)
[»] chr1 (12 HSPs)
chr1 (15-192)||(26023376-26023553)
chr1 (15-131)||(26028693-26028809)
chr1 (153-301)||(27317702-27317850)
chr1 (184-301)||(18643142-18643260)
chr1 (192-255)||(18188138-18188202)
chr1 (15-76)||(18188307-18188364)
chr1 (159-250)||(145352-145442)
chr1 (184-274)||(18640452-18640543)
chr1 (159-203)||(29547858-29547902)
chr1 (153-203)||(29530197-29530247)
chr1 (213-301)||(5032474-5032562)
chr1 (155-239)||(15552966-15553049)
[»] scaffold0248 (1 HSPs)
scaffold0248 (15-198)||(16080-16263)
[»] chr6 (7 HSPs)
chr6 (28-301)||(17190645-17190917)
chr6 (15-180)||(23600001-23600169)
chr6 (82-238)||(17275084-17275240)
chr6 (63-231)||(17270156-17270330)
chr6 (15-195)||(11302144-11302326)
chr6 (159-301)||(25398217-25398359)
chr6 (153-239)||(19441127-19441214)
[»] chr8 (10 HSPs)
chr8 (15-192)||(10733940-10734106)
chr8 (15-192)||(10738972-10739142)
chr8 (159-301)||(23429686-23429828)
chr8 (15-74)||(17909750-17909809)
chr8 (153-302)||(29185461-29185611)
chr8 (110-199)||(17703002-17703091)
chr8 (205-302)||(22274878-22274975)
chr8 (213-302)||(28350493-28350583)
chr8 (224-301)||(12642365-12642443)
chr8 (28-117)||(17702402-17702491)
[»] chr4 (6 HSPs)
chr4 (15-201)||(28874100-28874275)
chr4 (162-273)||(20679210-20679319)
chr4 (227-304)||(8563635-8563713)
chr4 (208-301)||(20354990-20355082)
chr4 (225-302)||(17349991-17350070)
chr4 (207-302)||(12753604-12753699)
[»] chr3 (5 HSPs)
chr3 (28-211)||(7117113-7117295)
chr3 (105-192)||(38419851-38419938)
chr3 (161-302)||(20463052-20463193)
chr3 (153-307)||(10937381-10937535)
chr3 (179-258)||(3170086-3170165)
[»] chr7 (7 HSPs)
chr7 (154-301)||(35338893-35339041)
chr7 (159-301)||(42939884-42940025)
chr7 (155-301)||(20125314-20125460)
chr7 (245-301)||(7578727-7578783)
chr7 (208-258)||(8048936-8048986)
chr7 (205-274)||(42937629-42937698)
chr7 (35-83)||(29332703-29332751)
[»] scaffold0081 (1 HSPs)
scaffold0081 (28-120)||(7780-7872)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 11312052 - 11312362
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  11312052 atgaataaatgaaaatatgatgtggatgtacattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattgacatt 11312151  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctaca-ttgtcatgtaaagaacacacttgaagagtaatata 213  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11312152 tagtctcatggctcttcatgtaattgtaaggtacaacttttgtatcctataaataggatctacatttgtcatgtaaagaacacacttgaagagtaatata 11312251  T
Q  214 atatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataacactaatttactag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  11312252 atatactctcttgttctctctttatcccttttctctactcttctatattgtacaatatcttataatactttggatcaatttcataacactaatttaccac 11312351  T
Q  314 gaaaagaaaac 324  Q
     ||||||||||    
T  11312352 taaaagaaaac 11312362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 7395889 - 7395722
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||          |||| |||||    
T  7395889 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattccttaactactatgattaaatgactt----------tattgatatt 7395800  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 192  Q
    ||||||||| |||||||||||||||  |||   ||||||||||||||||||||||||| |||||||||||||||||||    
T  7395799 tagtctcatagctcttcatgtaattagaagacgcaacttttgtatcctataaataggacctacattgtcatgtaaaga 7395722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 7384988 - 7384792
Alignment:
Q  31 atgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgctctt 130  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||| |||||||| ||          |||||||||||| ||||||    
T  7384988 atgatgtggatgtccattgtccctagaccttctatatttcttaactaatatgactaaatgactttattgat----------atttagtctcatggctctt 7384899  T
Q  131 catgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttct 230  Q
    |||||||||| ||| |||||||||||||| |||||||||||| |||||||  ||| ||||| ||| ||||||  || |||| ||||||||||  | ||||    
T  7384898 catgtaattgaaagttacaacttttgtattctataaataggacctacattaccatataaag-acatacttgagaagcaatacaatatactcttatattct 7384800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 301
Target Start/End: Original strand, 23453509 - 23453780
Alignment:
Q  35 tgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgctcttcatg 134  Q
    |||| ||||||||| | ||||| | |||||||||||||||||  | |||   ||| |||||||| |||  |||| | |||||| || ||  || ||||||    
T  23453509 tgtgaatgtccatttttcctaggctttctatatcccttaactcatttgagcgaatgactttattcattgttattgacatttagccttatgactattcatg 23453608  T
Q  135 taattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatata----atatactctcttgttct 230  Q
    || ||||||| ||||| |||| | ||||||||||||||  || |||| ||| |||| |||||| || |  |||||||||    ||||||  | |||||||    
T  23453609 tacttgtaagttacaaattttctgtcctataaataggacatatattgccatataaataacacatttaagaagtaatatatacaatatacatttttgttct 23453708  T
Q  231 ctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    || ||||| ||||| | ||||||||||||  ||||||||||||||| |||||||||||| ||||||||||||    
T  23453709 ctttttatgcctttctatctactcttctatgttgtacaatatcttacaatactttggattaatttcataaca 23453780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 18557533 - 18557456
Alignment:
Q  224 ttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  18557533 ttgttctctctttatcctttctctctactcttctacattgtacaatatcttacaatacttttgattaatttcataaca 18557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 301
Target Start/End: Original strand, 25232095 - 25232244
Alignment:
Q  153 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctac 251  Q
    ||||| ||| ||||||||||  || ||||| |||||||||||||||||||  || |||| |||| |||||||||||||| |||||||| ||| |||||||    
T  25232095 tttgtgtcccataaataggacatatattgtaatgtaaagaacacacttgagaagcaatacaatacactctcttgttctccctttatccttttctctctac 25232194  T
Q  252 tcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    |||||||  ||||||| ||||||  ||| ||||  ||||||||| |||||    
T  25232195 tcttctatgttgtacattatcttgcaatgcttttcatcaatttcttaaca 25232244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 302
Target Start/End: Original strand, 19084540 - 19084730
Alignment:
Q  116 agtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataat 215  Q
    ||||| || |||||||||||| ||||||  ||| || ||||| || |||||||||||  || |||  | ||||||||||||||||||  || |||| | |    
T  19084540 agtcttatggctcttcatgtacttgtaacttaccacatttgtgtcatataaataggacttatatttgcttgtaaagaacacacttgagaagcaatacact 19084639  T
Q  216 atactctctt-gttctctctt--tatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    |||||||||| ||||||||||  | |||| || || ||||| |||||  ||||||||||||||  |||||||| |||||||||||||||||    
T  19084640 atactctctttgttctctcttgttctcccattctccctacttttctatgttgtacaatatcttgcaatacttttgatcaatttcataacac 19084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 44117428 - 44117300
Alignment:
Q  178 attgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttcta---cattgtacaatatct 273  Q
    ||||||||||||| |||||||||||| | ||||| |||||||| |||| ||||| |||||||| ||| ||||||||||||||     |||||||||||||    
T  44117428 attgtcatgtaaataacacacttgaaaaataataaaatatactatcttattctccctttatccatttctctctactcttctatgttgttgtacaatatct 44117329  T
Q  274 tataatactttggatcaatttcataacac 302  Q
    |  || |||||| || | |||||||||||    
T  44117328 tgcaacactttgaattactttcataacac 44117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 16443293 - 16443196
Alignment:
Q  205 agtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    ||||||| |||||||||||||||||||  ||||||| ||| |||||||| |||||  ||||||||||||||  ||| |||||||| ||||| ||||||    
T  16443293 agtaatacaatatactctcttgttctccatttatccttttctctctacttttctatgttgtacaatatcttgcaatgctttggattaattttataaca 16443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 26195476 - 26195575
Alignment:
Q  205 agtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacact 303  Q
    ||||||| ||||||||||||||||||| |||||||| ||| ||| |||| |||||  ||||||||||||||  |||  |||| || ||||||||||||||    
T  26195476 agtaatacaatatactctcttgttctccctttatccttttctctatacttttctatgttgtacaatatcttggaatgttttgtattaatttcataacact 26195575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 25225790 - 25225896
Alignment:
Q  153 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctac 251  Q
    ||||| ||||||||||||||  |  ||||| |||||||||||||| ||||  || |||| |||| ||||| |||||||| |||||||| ||| |||||||    
T  25225790 tttgtgtcctataaataggacatgtattgtaatgtaaagaacacagttgagaagcaatacaatacactcttttgttctccctttatccttttctctctac 25225889  T
Q  252 tcttcta 258  Q
    |||||||    
T  25225890 tcttcta 25225896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 17830749 - 17830674
Alignment:
Q  225 tgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataa 299  Q
    |||| ||||||||||| ||| ||||||||||||||  ||||||||||||||| |||||||| ||| ||||| ||||    
T  17830749 tgttatctctttatccgtttctctctactcttctatgttgtacaatatcttacaatactttagattaattttataa 17830674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 28663841 - 28663553
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| | ||||| ||| |||||||||||||||||| |||||    
T  28663841 atgaataaatgaaaatatgatttggatgtccattgtccccagaccttctatattccttaactattgtgactaaatgactttatttattcctattgatatt 28663742  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataa 214  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||| ||    
T  28663741 tagtctcatggctcttcatgtaattataagttacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgagaaacaatacaa 28663642  T
Q  215 tatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    |||| ||| |||||||| || ||||| ||| |||||| | |||||  ||||||||||||||  |||| ||| ||| |||||||||||||    
T  28663641 tatattcttttgttctccctctatccttttctctctaattttctatgttgtacaatatcttgcaatattttagattaatttcataacac 28663553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 19699347 - 19699594
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||  ||||||||||||||||| |||||    
T  19699347 atgaataaatgcaaatatgatgtggatgaccattgtccctagaccttatatatcccttaactactatgattaaatgcctttatttattcctattgatatt 19699446  T
Q  115 tagtctcatcg----ctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaat 210  Q
    ||||||||| |    |||||||||||| |||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| | ||||||    
T  19699447 tagtctcatggctgactcttcatgtaactgtaagttacaacttttgtatcctataaatatgacatacattgtcatgtaaagaacacacttgtaaagtaat 19699546  T
Q  211 ataatatactctcttgttctctctttatcccttt-tctctactcttct 257  Q
     |||||||||||||| || || | ||||| |||| |||||||||||||    
T  19699547 gtaatatactctcttcttatcccattatctctttctctctactcttct 19699594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 17935464 - 17935752
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||| ||| || | |||   | |||| ||   || | | | |    
T  17935464 atgaataaatgaaaatatgatgcggatgtccattgtttctagaccttctatattccttaactcctaagagtgaatgcatatattgatagttaatgacact 17935563  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataa 214  Q
    |||||| || |||||||||||| ||||||  ||  || | ||| | ||||||||||||  || ||    |||||||  ||||||||||  || |||| ||    
T  17935564 tagtcttatggctcttcatgtacttgtaacttatcacatgtgtgttctataaataggacttatatctcaatgtaaaagacacacttgagaagcaatacaa 17935663  T
Q  215 tatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
     ||||||| ||||| ||||||||||||||| ||||||||||||||   |||||||||||||  ||| ||||  ||||||||||||||||    
T  17935664 catactcttttgttatctctttatccctttctctctactcttctatggtgtacaatatcttgcaatgcttttcatcaatttcataacac 17935752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 29742198 - 29742059
Alignment:
Q  162 tataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttctacat 261  Q
    ||||||||||| |||||||   |||||| || ||||||||   ||||||| |||||||||| |||||||| |||||||| || |||||| |||| || |     
T  29742198 tataaataggacctacattaaaatgtaatga-cacacttgtgaagtaatacaatatactcttttgttctccctttatcctttctctctattcttatatac 29742100  T
Q  262 tgtacaatatcttataatactttggatcaatttcataacac 302  Q
    | |||||||| ||  ||| | |||||| |||||||||||||    
T  29742099 tttacaatattttgcaatgcattggattaatttcataacac 29742059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 24228356 - 24228309
Alignment:
Q  154 ttgtatcctataaataggatctacattgtcatgtaaagaacacacttg 201  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  24228356 ttgtatcctataaataggatctatattgtaatgtaaagtacacacttg 24228309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 29948450 - 29948340
Alignment:
Q  192 aacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatca 290  Q
    |||||||||||| || |||| |||||||||| |||||||| || ||||  ||| |||||||||||| |  ||| ||||||||||   ||||||| ||| |    
T  29948450 aacacacttgaaaagcaatacaatatactcttttgttctccctgtatcattttctctctactcttcgatgttgcacaatatcttgccatactttagatta 29948351  T
Q  291 atttcataaca 301  Q
    |||||||||||    
T  29948350 atttcataaca 29948340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 18080023 - 18079943
Alignment:
Q  159 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcc 240  Q
    |||||||||||||| |||||||   |||||| || ||||||||   ||||||| ||||||||||||||||||| ||||||||    
T  18080023 tcctataaataggacctacattacaatgtaatga-cacacttgtgaagtaatacaatatactctcttgttctccctttatcc 18079943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 17945752 - 17945788
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtc 51  Q
    ||||||||| |||||||||||||||||||||||||||    
T  17945752 atgaataaaggaaaatatgatgtggatgtccattgtc 17945788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 25590113 - 25590203
Alignment:
Q  213 aatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    |||||||||| || ||||| |||||||| ||| |||||||| || ||  |||||||||||| |  |||||||| ||| |||||||||||||    
T  25590113 aatatactcttttattctcactttatccttttctctctacttttatatgttgtacaatatcatgcaatactttagattaatttcataacac 25590203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 40786726 - 40786794
Alignment:
Q  168 taggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctcttt 236  Q
    ||||| ||| ||||| ||||||||||||||||||   ||||||| |||| |||||  ||||||||||||    
T  40786726 taggacctatattgtaatgtaaagaacacacttgtgaagtaatacaatacactcttatgttctctcttt 40786794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 26023376 - 26023553
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||    
T  26023376 atgaataaatgaaaatatgatgtggatgtccattgtctctagaccttctatattccttaactactatgactaaatgactttatttattcctattgatatt 26023475  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 192  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  26023476 tagtctcatggctcttcatataattgtaagttacaacttttgtatcctataaatagaacctacattgtcatgtaaaga 26023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 26028693 - 26028809
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  26028693 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattccttaactattatgactaaatgactttatttattcctattgatatt 26028792  T
Q  115 tagtctcatcgctcttc 131  Q
    ||||||||| |||||||    
T  26028793 tagtctcatggctcttc 26028809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 301
Target Start/End: Original strand, 27317702 - 27317850
Alignment:
Q  153 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatc-ccttttctctac 251  Q
    ||||| ||||||||||| || ||| ||||  ||||||||| |||||||||  ||||||| ||||||||||||||||||| |||||||   || |||||||    
T  27317702 tttgtgtcctataaatatgacctatattgaaatgtaaaga-cacacttgagaagtaatacaatatactctcttgttctccctttatcttgttctctctac 27317800  T
Q  252 tcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    |||||||  ||||||||||||||  ||| |||| ||| ||||| ||||||    
T  27317801 tcttctatgttgtacaatatcttgaaatgcttttgattaattttataaca 27317850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 18643260 - 18643142
Alignment:
Q  184 atgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttc--tctactcttctacattgtacaatatcttataatac 281  Q
    ||||||||||||||||||   ||||||| |||||||| | || |||||||||||| |||||||  |||| |||| || | | ||||||||||| |||||     
T  18643260 atgtaaagaacacacttgtgaagtaatacaatatactatgttattctctctttat-ccttttcaatctattcttatatactttacaatatcttgtaatat 18643162  T
Q  282 tttggatcaatttcataaca 301  Q
    |||| |||||||||||||||    
T  18643161 tttgaatcaatttcataaca 18643142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 18188202 - 18188138
Alignment:
Q  192 aacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactctt 255  Q
    |||||||||||  |||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  18188202 aacacacttgagaagtaatataacatactcttttgttatctctttatccctttctctctactctt 18188138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 18188364 - 18188307
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaact 76  Q
    |||||||||||||||||||||| |||    ||||||||||||||||||||||| ||||||||    
T  18188364 atgaataaatgaaaatatgatgggga----cattgtccctagaccttctatattccttaact 18188307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 145442 - 145352
Alignment:
Q  159 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctcta 250  Q
    |||||||||||||| |||||||   |||||| || |||||||||  || |||| | |||||||||||||||||||||||||| || ||||||    
T  145442 tcctataaataggacctacattacaatgtaatga-cacacttgagaagcaatacactatactctcttgttctctctttatcctttctctcta 145352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 18640543 - 18640452
Alignment:
Q  184 atgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatctt 274  Q
    |||||||||||||||||    ||||||| |||||||| ||||||||||| |||||||||||  ||||| |||| || ||| |||||||||||    
T  18640543 atgtaaagaacacacttttgaagtaatacaatatactatcttgttctctgtttatccctttcactctattcttatatattttacaatatctt 18640452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 29547858 - 29547902
Alignment:
Q  159 tcctataaataggatctacattgtcatgtaaagaacacacttgaa 203  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||    
T  29547858 tcctataaataggacctatattgtaatgtaaagaacacacttgaa 29547902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 29530197 - 29530247
Alignment:
Q  153 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaa 203  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||||||||||    
T  29530197 tttgtgtcatataaataggacctatattgtaatgtaaagaacacacttgaa 29530247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 5032562 - 5032474
Alignment:
Q  213 aatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    |||||| |||||| ||||| |||||||  ||| |||||||| |||||  ||||||||||||||  |||||||| ||| ||||||||||||    
T  5032562 aatatattctcttcttctc-ctttatcattttctctctacttttctatgttgtacaatatcttgcaatactttagattaatttcataaca 5032474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 15552966 - 15553049
Alignment:
Q  155 tgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatc 239  Q
    |||||||||||||||||| ||| ||||  |||||| | |||||||||   ||||||| |||||||| |||| ||||| |||||||    
T  15552966 tgtatcctataaataggacctatattgcaatgtaatg-acacacttgtgaagtaatacaatatactatcttattctccctttatc 15553049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 16080 - 16263
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||||||||| ||| ||||||||||||| |||| |||||    
T  16080 atgaataaatgaaaatatgatgtggatgtacattgtctctataccttctatattctttaactactatgactaaatgactttatttattcatattgatatt 16179  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacac 198  Q
    || |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  16180 tactctcatggctcttcatgtaattgtaagttacaacttttgtatcctataaataggacctacattgccatgtaaagaacacac 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 28 - 301
Target Start/End: Original strand, 17190645 - 17190917
Alignment:
Q  28 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgct 127  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| |||| |||| ||||||| || |||  ||    
T  17190645 aatatgatgtggatgtccattttccctagactttctatatcccttaactactatgactaaatgactttattcattcttattgatatttaatcccatgact 17190744  T
Q  128 cttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgt 227  Q
    |||||| || ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||  |||||||||  || |||| |||||||||| ||||    
T  17190745 cttcatatacttgtaagttacaacttttgcatcctataaataggatctacattgccatgtaaagggcacacttgagaagaaatacaatatactcttttgt 17190844  T
Q  228 tctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    |||  |||||| | ||||||||| | || ||  ||||||||||||||  ||| |||| ||| | ||||||||||    
T  17190845 tcttcctttat-cattttctctatttttttatgttgtacaatatcttgcaattctttagattattttcataaca 17190917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 23600169 - 23600001
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||    
T  23600169 atgaataaatgaaaatatgatgtagatgtccattgtccctaaaccttctatatcccttaactactatgactaaatgactttgtttattcctattgatatt 23600070  T
Q  115 tag---tctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacatt 180  Q
    |||   ||||||  ||||||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  23600069 tagtactctcatgactcttcatgtaattgtaagttacaacttttatatcctataaataggacctacatt 23600001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 17275240 - 17275084
Alignment:
Q  82 gacttaataactttatttattcctattaatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattg 181  Q
    |||| ||| |||||||| |||| |||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  17275240 gactaaatgactttattaattcttattgatatttagtctcatgactcttcatgtaattgtaagttacaacttttgtatcatataaataggacctacattg 17275141  T
Q  182 tcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttat 238  Q
     ||||||||||||||||||||  || |||| ||||| ||||||||||||| ||||||    
T  17275140 ccatgtaaagaacacacttgagaagcaatacaatatgctctcttgttctccctttat 17275084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 17270330 - 17270156
Alignment:
Q  63 tatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcct 162  Q
    ||||||||||||  ||||||||  |||  ||||||| |||| |||| | ||||||||| ||  ||||||||||||||||||| |||||||||||||||||    
T  17270330 tatatcccttaagcactatgaccaaatggctttattaattcttattgaaatttagtcttatgactcttcatgtaattgtaagttacaacttttgtatcct 17270231  T
Q  163 ataa------ataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctc 231  Q
    ||||      |||||| |||||||| ||||||||||||||||||||  || |||| ||||||||||||| |||||    
T  17270230 ataaatagatataggacctacattgccatgtaaagaacacacttgagaagcaatacaatatactctctttttctc 17270156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 11302144 - 11302326
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttatt------cctatt 108  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||   ||||| || || |  ||||||| ||| ||||||||||||      | ||||    
T  11302144 atgaataaatgaaaatatgatgtggatgttcattgtct-tagacct---atatctctgaattgttatgactaaatgactttatttatttttattcttatt 11302239  T
Q  109 aatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaaca 195  Q
     ||||||  | |||| |||||||||||||||||||  |||||||||||||||||||||||||||  ||||||  |||||||| ||||    
T  11302240 gatattttatttcatagctcttcatgtaattgtaaattacaacttttgtatcctataaataggacttacattaccatgtaaaaaaca 11302326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 159 - 301
Target Start/End: Original strand, 25398217 - 25398359
Alignment:
Q  159 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttct 257  Q
    |||||||||||||| |||||||   |||||| || ||||||||   ||||||| ||||||||||||||||||| |||||||| ||| |||||||| ||||    
T  25398217 tcctataaataggacctacattacaatgtaatga-cacacttgtgaagtaatacaatatactctcttgttctccctttatccttttctctctacttttct 25398315  T
Q  258 acattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    |   |||||||||||||  ||| |||||||| ||||||||||||    
T  25398316 atggtgtacaatatcttgcaatgctttggattaatttcataaca 25398359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 19441214 - 19441127
Alignment:
Q  153 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctc-ttgttctctctttatc 239  Q
    ||||| ||||||||||||||  || ||||| || ||| | |||||||||   ||||||||||||||||||| |||||||| |||||||    
T  19441214 tttgtgtcctataaataggacatatattgtaatataacggacacacttgtgaagtaatataatatactctctttgttctcactttatc 19441127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 10733940 - 10734106
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||          |||| |||||    
T  10733940 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattctttaactactatgactaaatgactt----------tattgatatt 10734029  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 192  Q
    || ||||||  ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||    
T  10734030 taatctcatgactcttcatgtaattgtaagttacaac-tttgtatcctataaataggacctacattgtcatgtaaaga 10734106  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 10738972 - 10739142
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||          |||| |||||    
T  10738972 atgaataaatgaaaatattatgtggatgtccattgtccctagaccttctatattctttaactactatgactaaatgactt----------tattgatatt 10739061  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatc---ctataaataggatctacattgtcatgtaaaga 192  Q
    |||||||||  |||||||||||| |||||| |||||||||||||||   |||||||||||| |||||||| ||||||||||    
T  10739062 tagtctcatgactcttcatgtaaatgtaagttacaacttttgtatcctactataaataggacctacattgccatgtaaaga 10739142  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 159 - 301
Target Start/End: Original strand, 23429686 - 23429828
Alignment:
Q  159 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcc-cttttctctactcttct 257  Q
    |||||||||||||| |||||||   |||||| || ||||||||   ||||| | ||||||||||||||||||| |||||||| ||| |||||||| ||||    
T  23429686 tcctataaataggacctacattacaatgtaatga-cacacttgtgaagtaaaacaatatactctcttgttctccctttatcctcttctctctacttttct 23429784  T
Q  258 acattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    | |||||||||||||||   || |||||||| ||||||||||||    
T  23429785 atattgtacaatatcttgcgatgctttggattaatttcataaca 23429828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 17909750 - 17909809
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaa 74  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  17909750 atgaataaatgaaaatatgatgtggatgtccattgtccctagcccttctattttccttaa 17909809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 302
Target Start/End: Complemental strand, 29185611 - 29185461
Alignment:
Q  153 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctcttta-tcccttttctctac 251  Q
    ||||| ||||||||||||||  || ||||| ||||||| ||||||||||   ||||||  ||||||||||| |||||| |||||| ||| |||||||||     
T  29185611 tttgtgtcctataaataggacatatattgtaatgtaaaaaacacacttgtgaagtaatgcaatatactctcatgttctttctttattcctttttctctat 29185512  T
Q  252 tcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    |||| || | | |||||||| ||  |||| ||||||| |||||||||||||    
T  29185511 tcttatatactttacaatatattgcaatattttggattaatttcataacac 29185461  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 17703002 - 17703091
Alignment:
Q  110 atatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacact 199  Q
    |||||||||||||| |||||    ||| ||||||| || ||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  17703002 atatttagtctcatggctctgagggtacttgtaagttaaaacttttgtatcctataaataggacatacattgtcatgtaaagcacacact 17703091  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 22274878 - 22274975
Alignment:
Q  205 agtaatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    ||||||| ||||||||||| ||||||| |||||||| || |||||| |||| || | | |||||||||||  ||| |||||||| |||||||||||||    
T  22274878 agtaatacaatatactctcctgttctccctttatcctttctctctattcttatatactttacaatatcttgcaatgctttggattaatttcataacac 22274975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 28350583 - 28350493
Alignment:
Q  213 aatatactctcttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    |||||||||| |||||||| |||||||  ||| |||||| | |||||  ||||||||||||||  |||||||||||| |||||||||||||    
T  28350583 aatatactctattgttctccctttatctttttctctctagttttctatgttgtacaatatcttgcaatactttggattaatttcataacac 28350493  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 12642443 - 12642365
Alignment:
Q  224 ttgttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    |||||||||||||||||| || ||||||||||| ||  ||||||||||||||  ||| |||| ||| ||||||||||||    
T  12642443 ttgttctctctttatccccttctctctactcttttatgttgtacaatatcttgcaatgcttttgattaatttcataaca 12642365  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 17702402 - 17702491
Alignment:
Q  28 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttag 117  Q
    |||||||| |||||||||||| ||||||||| |||||| || ||||| | |||||| | ||| | |||||| ||||  ||| ||||||||    
T  17702402 aatatgatctggatgtccattttccctagactttctatttctcttaaatcctatgagtaaatgattttattcattctcattgatatttag 17702491  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 28874100 - 28874275
Alignment:
Q  15 atgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatt 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| ||||||| ||| |||||||| ||          |||    
T  28874100 atgaataaatgaaaatatgatgtggatgtccattatccctagaccttctatatttcttaactattatgactaaatgactttattgat----------att 28874189  T
Q  115 tagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttg 201  Q
    ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||    
T  28874190 tagtctcatggttcttcatgtaattgtaagttacaacttttgtatcctataaataggacctacactgtcatataaag-acacacttg 28874275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 20679319 - 20679210
Alignment:
Q  162 tataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttctacat 261  Q
    |||||||||||  || ||||| |||||||||| ||||||||  |||||||||||||||||| ||||| ||| |||||   ||||||||||| |||||  |    
T  20679319 tataaataggacatatattgt-atgtaaagaagacacttgagaagtaatataatatactcttttgttatctttttat-ttttttctctactattctatgt 20679222  T
Q  262 tgtacaatatct 273  Q
    |||||| |||||    
T  20679221 tgtacagtatct 20679210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 8563713 - 8563635
Alignment:
Q  227 ttctctctttatcccttt-tctctactcttctacattgtacaatatcttataatactttggatcaatttcataacacta 304  Q
    |||||||||||| ||||| ||| || |||| || ||| |||||||||||  |||||||| |||||||||||||||||||    
T  8563713 ttctctctttattcctttctctgtattcttatatattttacaatatcttgcaatactttagatcaatttcataacacta 8563635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 20355082 - 20354990
Alignment:
Q  208 aatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    |||| |||||||||| || |||||||||||| ||||||||||||| |||||  |  || |||||||| ||||||||| ||| ||||| ||||||    
T  20355082 aatacaatatactcttttattctctctttat-ccttttctctacttttctatgtcatataatatcttgtaatactttagattaattttataaca 20354990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 17349991 - 17350070
Alignment:
Q  225 tgttctctctttatcccttttctc--tactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    |||||| ||||||| |||||||||  ||||||| || | | |||||||||||  |||||||| |||||||||||||||||    
T  17349991 tgttctatctttattccttttctctctactcttatatactttacaatatcttgcaatacttttgatcaatttcataacac 17350070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 12753699 - 12753604
Alignment:
Q  207 taatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatcttataatactttggatcaatttcataacac 302  Q
    ||||| |||||||||||| |||||| |||||||| || |||||| |||| || | | ||||||||||   ||| || ||||| |||||||||||||    
T  12753699 taatacaatatactctctggttctccctttatcctttctctctattcttatatactttacaatatctagcaatgctctggattaatttcataacac 12753604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 7117295 - 7117113
Alignment:
Q  28 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtctcatcgct 127  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||| | |||||||| |||  ||||||| |||| |||| ||||||||||||||   |    
T  7117295 aatatgatgtggatgtccattttccctagaccttttatatcccttaatttctatgactaaatgtctttattcattcttattgatatttagtctcatgatt 7117196  T
Q  128 cttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaata 211  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| |  |||||||||| ||||||  |||||||    
T  7117195 cttcatgtacttgtaagttacaacttttgtatcctataaataggaccaacattg-ccggtaaagaacatacttgagaagtaata 7117113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 38419851 - 38419938
Alignment:
Q  105 tattaatatttagtctcatcgctcttcatgtaattgtaagctacaacttttgtatcctataaataggatctacattgtcatgtaaaga 192  Q
    |||| |||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||    
T  38419851 tattgatatttagtctcatggttcttcatgtaattgtaagttacaacttttgtatcgtataaataggagttacattgtcatgtaaaga 38419938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 20463193 - 20463052
Alignment:
Q  161 ctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttctaca 260  Q
    |||||||||| | ||| ||||| |||||||||||||||||||  || |||| |  ||||||| ||||| ||||||||||||||| |||||||||||||      
T  20463193 ctataaatagaacctatattgtaatgtaaagaacacacttgagaagcaatacatcatactcttttgttatctctttatccctttcctctactcttctatg 20463094  T
Q  261 ttgtacaatatcttataatactttggatcaatttcataacac 302  Q
    ||||||||||| ||  ||| ||||  |||||||| |||||||    
T  20463093 ttgtacaatattttgcaatgcttttcatcaattttataacac 20463052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 10937381 - 10937535
Alignment:
Q  153 tttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctac 251  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||| ||||  || |||| || ||||||| ||||| ||| ||||||||||| |||| ||    
T  10937381 tttgtgtcctataaataggatctatattgcaatgtaaaga-cacatttgagaagcaatacaacatactcttttgttatctatttatccctttctctcaac 10937479  T
Q  252 tcttctacattgtacaatatcttataatactttggatcaatttcataacactaatt 307  Q
    |||| ||| ||||| ||||||||| |||| ||| ||| |||||||||||| |||||    
T  10937480 tcttttacgttgtaaaatatcttacaatattttagattaatttcataacaataatt 10937535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 3170165 - 3170086
Alignment:
Q  179 ttgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactcttcta 258  Q
    |||| ||||||| |||||||||  | ||||||  ||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  3170165 ttgtaatgtaaaaaacacactttga-agtaatgcaatatactctcttcttctccctttatctctttctctctactcttcta 3170086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 35339041 - 35338893
Alignment:
Q  154 ttgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctact 252  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||   |  |||| |||||||| |||| ||||||||||||||||||  ||||| |    
T  35339041 ttgtatcctataaataggatctacattgtcatgtaaagaatacacttgtgaaagaatacaatatactatcttattctctctttatccctttaactctatt 35338942  T
Q  253 cttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    ||| || | | |||||||||||  ||||||||  |||||||||||||||    
T  35338941 cttatatactttacaatatcttgcaatactttaaatcaatttcataaca 35338893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 301
Target Start/End: Original strand, 42939884 - 42940025
Alignment:
Q  159 tcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttttctctactcttcta 258  Q
    ||||||||||| || |||||||   |||||| || ||||||||   ||||||| ||||||| ||||||||||| |||||||| || |||||| |||| ||    
T  42939884 tcctataaataagacctacattacaatgtaatga-cacacttgtgaagtaatacaatataccctcttgttctccctttatcctttctctctattcttata 42939982  T
Q  259 cattgtacaatatcttataatactttggatcaatttcataaca 301  Q
     | | |||||||||||  ||| |||||||| ||||||||||||    
T  42939983 tactttacaatatcttgcaatgctttggattaatttcataaca 42940025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 20125314 - 20125460
Alignment:
Q  155 tgtatcctataaataggatctacattgtcatgtaaagaacacacttgaagagtaatataatatactctcttgttctctctttatcccttt-tctctactc 253  Q
    ||||||||||||||||||  || ||||  |||||| || ||||||||   ||||||| ||||||| |||||||||||  ||||||| ||| |||||| |     
T  20125314 tgtatcctataaataggacatatattgcaatgtaatga-cacacttgtgaagtaatacaatataccctcttgttctccatttatccttttctctctaatt 20125412  T
Q  254 ttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    || ||  ||||||||||||||  ||| |||||||| ||||| ||||||    
T  20125413 ttatatgttgtacaatatcttgcaatgctttggattaattttataaca 20125460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 7578727 - 7578783
Alignment:
Q  245 tctctactcttctacattgtacaatatcttataatactttggatcaatttcataaca 301  Q
    ||||||||||| ||  ||||||||||||||| |||||||| ||| ||||||||||||    
T  7578727 tctctactcttatatgttgtacaatatcttacaatactttagattaatttcataaca 7578783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 8048986 - 8048936
Alignment:
Q  208 aatataatatactctcttgttctctctttatccc-ttttctctactcttcta 258  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  8048986 aatataatatattctcttgttctc-ctttatccctttttctctactcttcta 8048936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 42937629 - 42937698
Alignment:
Q  205 agtaatataatatactctcttgttctctctttatcccttttctctactcttctacattgtacaatatctt 274  Q
    ||||||| ||||||||||||||||||  |||||||| || |||||| |||| || | | |||||||||||    
T  42937629 agtaatacaatatactctcttgttcttcctttatcctttctctctattcttatatactttacaatatctt 42937698  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 29332703 - 29332751
Alignment:
Q  35 tgtggatgtccattgtccctagaccttctatatcccttaactactatga 83  Q
    |||||||||||||| | |||| || ||||||||||||||||| ||||||    
T  29332703 tgtggatgtccatttttcctaaactttctatatcccttaactcctatga 29332751  T

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Target: scaffold0081 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 7780 - 7872
Alignment:
Q  28 aatatgatgtggatgtccattgtccctagaccttctatatcccttaactactatgacttaataactttatttattcctattaatatttagtct 120  Q
    ||||| |||| |||||||||| ||||||||| ||||||||||||||||| |||||| | |||  |||||||||||| ||||||||||||||||    
T  7780 aatattatgtagatgtccattttccctagactttctatatcccttaactcctatgagtaaatggctttatttattcttattaatatttagtct 7872  T

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