View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16051_low_8 (Length: 330)

Name: NF16051_low_8
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16051_low_8
NF16051_low_8
[»] chr3 (8 HSPs)
chr3 (118-321)||(224717-224920)
chr3 (19-121)||(224587-224689)
chr3 (228-326)||(210345-210443)
chr3 (228-321)||(221893-221986)
chr3 (228-319)||(197070-197161)
chr3 (228-326)||(216948-217046)
chr3 (41-92)||(216723-216774)
chr3 (228-318)||(205033-205123)
[»] chr4 (2 HSPs)
chr4 (228-318)||(6903370-6903460)
chr4 (275-319)||(6904803-6904847)
[»] chr1 (1 HSPs)
chr1 (254-321)||(3808344-3808411)
[»] chr5 (1 HSPs)
chr5 (228-326)||(29838223-29838321)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 118 - 321
Target Start/End: Original strand, 224717 - 224920
Alignment:
Q  118 ttaaaaactaaaatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224717 ttaaaaactaaaatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca 224816  T
Q  218 gcataattgatttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaa 317  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||||| |||||||||||||||| | |||||||||||||||||    
T  224817 gcataattgatttcaaccctggaccttttcgtaggtctaggacactctgtgtttgtttctccattagtacttggagttttgagtggatagcaaatctcaa 224916  T
Q  318 caga 321  Q
    ||||    
T  224917 caga 224920  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 224587 - 224689
Alignment:
Q  19 tgcaattttcgagcttcacaacaacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcacaagggagcgagggaggacacatcaatt 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  224587 tgcaattttggagcttcacaacaacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcacaagggagcgaggtaggacacatcaatt 224686  T
Q  119 taa 121  Q
    |||    
T  224687 taa 224689  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 210345 - 210443
Alignment:
Q  228 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagacgttg 326  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  210345 tttcaaccttggaccttttcataggcctaggacactcggtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttg 210443  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 221893 - 221986
Alignment:
Q  228 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacaga 321  Q
    |||||||| ||||||||||| |||| ||| ||||||| ||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||    
T  221893 tttcaaccttggaccttttcctaggactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacaga 221986  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 197070 - 197161
Alignment:
Q  228 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaaca 319  Q
    |||||||| ||||||||||| |||| |||| ||| || ||||||| ||||||| ||  ||||||||||||||||||||| ||||||||||||    
T  197070 tttcaaccttggaccttttcgtaggactagcacattttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaaca 197161  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 216948 - 217046
Alignment:
Q  228 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagacgttg 326  Q
    |||||||| ||||||||||| |||| ||| || |||| || |||||||||||| | |||||| ||||||| ||||||||||||||||||| ||| ||||    
T  216948 tttcaaccttggaccttttcctaggactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttg 217046  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 216723 - 216774
Alignment:
Q  41 aacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcaca 92  Q
    ||||||| | |||||||||||||| |||||||||||||||| ||||||||||    
T  216723 aacatttggattcagatgctttgaagcaaaatcagcattaacatactgcaca 216774  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 205123 - 205033
Alignment:
Q  228 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaac 318  Q
    |||||||||| || |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | ||||||||||||||||||    
T  205123 tttcaacccttgaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaac 205033  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 6903370 - 6903460
Alignment:
Q  228 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaac 318  Q
    ||||||||||||| |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | ||||||||||||||||||    
T  6903370 tttcaaccctggaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaac 6903460  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 6904803 - 6904847
Alignment:
Q  275 tctccactagtacttggagtttttaatggatagcaaatctcaaca 319  Q
    |||||| |||||||||||||||| ||||||||  |||||||||||    
T  6904803 tctccattagtacttggagttttgaatggataagaaatctcaaca 6904847  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 3808344 - 3808411
Alignment:
Q  254 ctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacaga 321  Q
    |||||| |||| ||||||| ||||| | |||||||||||||||| || |||||||||||| |||||||    
T  3808344 ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacaga 3808411  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 29838223 - 29838321
Alignment:
Q  228 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagacgttg 326  Q
    |||||||| ||||||||||  |||  |||||| | || || |||| ||||||| |||||||||||||||  || |||||| |||| |||||||| ||||    
T  29838223 tttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttg 29838321  T

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