View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16051_low_9 (Length: 321)
Name: NF16051_low_9
Description: NF16051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16051_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 11312721 - 11312424
Alignment:
| Q |
19 |
agttatatgttttatcatgaagtctttgaacccaagacatatcatacttttgattcaattcctacacaagtttctctaacatagtaatgtttgccttcat |
118 |
Q |
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| T |
11312721 |
agttatatgttttatcatgaagtctttgaacccaagacatatcatacttttgattcaattcctacacaagtttctctaacatagtaatgtttgccttcat |
11312622 |
T |
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| Q |
119 |
tgtcaatctaatgtttgccttttgattcaatgaaatgagctctgggtttttggatttctaattctaaaatacaattggaattttatttttattcgcgacg |
218 |
Q |
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| T |
11312621 |
tgtcaatctaatgtttgccttttgattcaatga-----gctctgggtttttggatttctaattctaaaatacagttggaattttatttttattcgcgacg |
11312527 |
T |
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| Q |
219 |
aattagaaatgcggaggtgaatttttccaatgcttgaaaataatcaatttcaaacaataaccatttatttattttatttcaagaatttccttttaaattt |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11312526 |
aattagaaatgcggaggtgaatttttctaatgcttgaaaataatcaatttcaaacaataaccttttatttattttatttcaagaatttccttttaaattt |
11312427 |
T |
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