View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_high_1 (Length: 617)
Name: NF16052_high_1
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 85 - 367
Target Start/End: Complemental strand, 36145171 - 36144889
Alignment:
| Q |
85 |
ttataatatacatatgaagtttatattgtcaaacaaatattaaaagaattaatattttcttctaataaattaatgttcaagcttattttatatttatatt |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
36145171 |
ttataatatacatatgaagtttatattgtcaaacaaatattaaaagaattaatattttcttctaataaattaatcttcaagcttgttttatatttatatt |
36145072 |
T |
|
| Q |
185 |
tcgcttagttaagaggtttttgttagacatttactagtcttttgatatgttaacactatggatctcattttaagttgttgtacaaggggattctctctcg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
36145071 |
tcgcttagttaagaggtttttgttagacatttactagtcttttgatatgttaacactatggatttcattataagttgttgtacaaggggattctctctcg |
36144972 |
T |
|
| Q |
285 |
gccattaaaatgattgaaggtaatgcgagtgttttacatgnnnnnnnnnnnnngttgtctaaggctaaggtagtatgtcattt |
367 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
36144971 |
gccattaaaatgattgaaggtaatgcgagtgtttcacatgtttttcattatttgttgtctaaggctaaggtagtatgtcattt |
36144889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 386 - 600
Target Start/End: Complemental strand, 36105635 - 36105421
Alignment:
| Q |
386 |
aacactgaaagttttctaaaacatgagaaggatgatgatgaataaagttttacgatcttgagttattttaagacaaataactannnnnnncttttcagat |
485 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36105635 |
aacactgaaagttttctaaaacatgataaggatgatgatgaataaagttttacgatcttgagttattttaagacaaataactatttttttcttttcagat |
36105536 |
T |
|
| Q |
486 |
gcatgcatgcatatcttattgaataatgttaataccgctacaactcttgcatttattaggagaagtcttactaaagttgttaaaatcatttttctgatca |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36105535 |
gcatgcatgcatatcttattgaataatgttaataccgctacaactcttgcatttattaggagaagtcttactaaagttgttaaaatcatttttctgatca |
36105436 |
T |
|
| Q |
586 |
actatgtaacattag |
600 |
Q |
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||||||||||||||| |
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| T |
36105435 |
actatgtaacattag |
36105421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 7960925 - 7961003
Alignment:
| Q |
101 |
aagtttatattgtcaaacaaatattaaaagaattaatattttcttctaataaattaatgttcaagcttattttatattt |
179 |
Q |
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||||| |||||||||||||||||| |||| || ||| ||||||||||||||||||||| ||| |||||||||||||| |
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| T |
7960925 |
aagttaatattgtcaaacaaatataaaaataactaacattttcttctaataaattaatcgtcatacttattttatattt |
7961003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 426 - 561
Target Start/End: Complemental strand, 10858624 - 10858494
Alignment:
| Q |
426 |
aataaagttttacgatcttgagttattttaagacaaataactannnnnnncttttcagatgcatgcatgcatatcttattgaataatgttaataccgcta |
525 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10858624 |
aataaggttttacgatcttgagttatttaaagacaaataactatttttt-cttttcagatgcatgcat----atcttattgaataatgttaataccgcta |
10858530 |
T |
|
| Q |
526 |
caactcttgcatttattaggagaagtcttactaaag |
561 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
10858529 |
caactcttgcatttattaggagaagtctttctaaag |
10858494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 48583361 - 48583308
Alignment:
| Q |
100 |
gaagtttatattgtcaaacaaatattaaaagaattaatattttcttctaataaa |
153 |
Q |
| |
|
|||||| | |||||||||||||||| ||||||| ||| |||||||||||||||| |
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| T |
48583361 |
gaagttaaaattgtcaaacaaatataaaaagaaataacattttcttctaataaa |
48583308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 10858717 - 10858677
Alignment:
| Q |
389 |
actgaaagttttctaaaacatgagaaggatgatgatgaata |
429 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||| |
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| T |
10858717 |
actgaaagttttctaaaacatgataaagatgatgatgaata |
10858677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 8734321 - 8734373
Alignment:
| Q |
106 |
tatattgtcaaacaaatattaaaagaattaatattttcttctaataaattaat |
158 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
8734321 |
tatattgtcaaacaaatataagaagaattaatattttcttctaataaattaat |
8734373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 18991372 - 18991320
Alignment:
| Q |
112 |
gtcaaacaaatattaaaagaattaatattttcttctaataaattaatgttcaa |
164 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
18991372 |
gtcaaacaaatataaaaagaattaacattttcttctaataaattaatcttcaa |
18991320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 5061517 - 5061459
Alignment:
| Q |
100 |
gaagtttatattgtcaaacaaatattaaaagaattaatattttcttctaataaattaat |
158 |
Q |
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|||||| |||||| ||||||||||| |||| || |||||||||||||||||||| |||| |
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|
| T |
5061517 |
gaagttgatattgccaaacaaatataaaaaaaactaatattttcttctaataaaataat |
5061459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 20025265 - 20025187
Alignment:
| Q |
101 |
aagtttatattgtcaaacaaatattaaaagaattaatattttcttctaataaattaatgttcaagcttattttatattt |
179 |
Q |
| |
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||||| |||||||||||||||||| || | || ||| |||||||||| |||||||||| |||| | || |||||||||| |
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| T |
20025265 |
aagttaatattgtcaaacaaatataaatacaactaacattttcttctgataaattaatcttcatgtttgttttatattt |
20025187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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