View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16052_high_21 (Length: 228)
Name: NF16052_high_21
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 39268857 - 39269070
Alignment:
| Q |
14 |
aatatccatctgcagagaaggtaaataaaaaattatgatttacataatagagcaactttacaaggataaaaataataattaaaaactgaagatcataaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39268857 |
aatatccatctgcagagaaggtaaataaaaaattatgatttacataatagagcaactttaaaaggataaaaataataattaaaaactgaagatcataaat |
39268956 |
T |
|
| Q |
114 |
gaagagaagggtgattgaggatactgacgatgtcctcgagcgaggaaactgaaagatgagcttcccaagtatcagagtggaaattagtgacatgaattac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39268957 |
gaagagaagggtgattgaggatactgacgatgtcctcgagcgaggaaactgaaagatgagcttcccaagtatcagagtggaaattagtgacatgaattac |
39269056 |
T |
|
| Q |
214 |
aaggtgagaagaat |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39269057 |
aaggtgagaagaat |
39269070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University