View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_high_6 (Length: 404)
Name: NF16052_high_6
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 16247778 - 16247400
Alignment:
| Q |
10 |
ataattctcatgcaccacaacattcaccgacatttgccaacatctttactgctcagatccaccttaatcgcttcaccatctttgctaaatcatgtggctg |
109 |
Q |
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| T |
16247778 |
ataattctcatgcaccacaacattcaccgacatttgccaacatctttacttctcagatcaaccttaaccccttcaccatctttgctaaatcatgtggctg |
16247679 |
T |
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| Q |
110 |
tgtagaaattttcaactttctacccaaaccatgaattacaacctgccaatgcaaaagaaaatcaacaccaaatatatcaagctaccctttgcaaaatttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16247678 |
tgtagaaattttcaactttctacccaaaccatgaattacaacctgccaatgcaaaagaaaatcaacaccaaatatatcaagctaccctttgcaaaatttc |
16247579 |
T |
|
| Q |
210 |
tattacacaataagtagatgcttacatgtaggttaaaagaagaaaatgataaaaacatgttgaacaaaagatttacagtaaagtgatgtatagcataaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16247578 |
tattacacaataagtagatgcttacatgtaggttaaaagaagaaaatgataaaaacatgttgaacaaaagatttacagtaaagtgatgtatagcataaca |
16247479 |
T |
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| Q |
310 |
aaattatacaacaattgattaatgaatatcaatgcatatttaaagatgaccaagctacaccaagctaactaaagaaaat |
388 |
Q |
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| T |
16247478 |
aaattatacaacaattgattaatgaatatcaatgcatatttaaagatgaccaagctacaccaagctaactaaagaaaat |
16247400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 16253446 - 16253391
Alignment:
| Q |
10 |
ataattctcatgcaccacaacattcaccgacatttgccaacatctttactgctcag |
65 |
Q |
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| T |
16253446 |
ataattctcatgcaccacaacattcaccgccatttgccaacatctttactgctcag |
16253391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 16247957 - 16247908
Alignment:
| Q |
10 |
ataattctcatgcaccacaacattcaccgacatttgccaacatctttact |
59 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
16247957 |
ataattctcatgcaccacaacattcaaagacatttgccaacatttttact |
16247908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 16253536 - 16253487
Alignment:
| Q |
10 |
ataattctcatgcaccacaacattcaccgacatttgccaacatctttact |
59 |
Q |
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|||||||| || ||||||||||||||| ||||||||||||||| |||||| |
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| T |
16253536 |
ataattcttatacaccacaacattcacagacatttgccaacatttttact |
16253487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 16248047 - 16247997
Alignment:
| Q |
10 |
ataattctcatgcaccacaacattcaccgacatttgccaacatctttactg |
60 |
Q |
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|||||||||||||||||||||||||| ||| |||||| ||| | ||||||| |
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| T |
16248047 |
ataattctcatgcaccacaacattcatcgatatttgcaaacctttttactg |
16247997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 67 - 388
Target Start/End: Complemental strand, 3626843 - 3626532
Alignment:
| Q |
67 |
tccaccttaatcgcttcaccatctttgctaaatcatgtggctgtgtagaaattttcaactttctacccaaaccatgaattacaacctgccaatgcaaaag |
166 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3626843 |
tccaccttaaccgcttcaccatctttgctaaatcatgtggctgtgcagaaattttcaactttctacccaaaccatgaattacaacctgccaatgcaaaag |
3626744 |
T |
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| Q |
167 |
aaaatcaacaccaaatatatcaagctaccctttgcaaaatttctattacacaataagtagatgcttacatgtaggttaaaagaagaaaatgataaaaaca |
266 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3626743 |
aaaatcaacaccaaatgtatcaagctaccctttacaaaatttctattacacaataagtagatgcttacatgtaggttaagggaagaaaatgataaaaaca |
3626644 |
T |
|
| Q |
267 |
tgttgaacaaaagatttacagtaaagtgatgtatagcataacaaaattatacaacaattgattaatgaatatcaatgcatatttaaagatgaccaagcta |
366 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |
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| T |
3626643 |
tgttgaacaaaagatttacagtaaagtgatgtataggataacaaaattatacaacaactgattaatga----------atatttaaatatgaccaagcta |
3626554 |
T |
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| Q |
367 |
caccaagctaactaaagaaaat |
388 |
Q |
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||||||||||| |||||||||| |
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| T |
3626553 |
caccaagctaaataaagaaaat |
3626532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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