View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16052_low_10 (Length: 399)

Name: NF16052_low_10
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16052_low_10
NF16052_low_10
[»] chr4 (18 HSPs)
chr4 (12-378)||(3934854-3935220)
chr4 (200-378)||(3921691-3921872)
chr4 (12-176)||(3808399-3808563)
chr4 (12-162)||(3985370-3985520)
chr4 (200-378)||(4023362-4023540)
chr4 (173-378)||(3808326-3808534)
chr4 (171-378)||(4000446-4000653)
chr4 (200-378)||(3815900-3816081)
chr4 (200-378)||(3985286-3985464)
chr4 (12-176)||(4023432-4023596)
chr4 (200-354)||(3957152-3957306)
chr4 (12-124)||(3921635-3921747)
chr4 (12-176)||(3957096-3957260)
chr4 (12-176)||(3815973-3816137)
chr4 (12-176)||(4000516-4000680)
chr4 (304-378)||(3800156-3800230)
chr4 (304-378)||(4217129-4217203)
chr4 (343-378)||(3936823-3936858)
[»] chr5 (1 HSPs)
chr5 (200-378)||(13396132-13396310)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 3934854 - 3935220
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    ||||||| ||||||||||||||||| ||||||||||||  ||||  |   ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3934854 catcatcttttggatgtcaaagcaatctagaaaccctggttttaaaagccactcaaattgagagcataccttcaagcatcaaggatcttacaagactaag 3934953  T
Q  112 aaagttacacataggcggttgctcaaagattctggctctacccgaccttcctgtatcagttgaaatcctggatttaagttctagtaacattgagatcata 211  Q
    ||| ||| ||||| ||||||||  |||| |||||||||||||||| |||||| |||||||||||||||||||||||||   | |||||||||||||||||    
T  3934954 aaaattaaacatatgcggttgcaaaaagcttctggctctacccgagcttcctttatcagttgaaatcctggatttaagaagttgtaacattgagatcata 3935053  T
Q  212 ccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcatcagttgaaattc 311  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3935054 ccttcaagcatcaagaatcttacgaggctaagaaaactagacatacgattttccaacaagcttctggctctacccgagctttcttcatcagttgaaattc 3935153  T
Q  312 tacttgttgactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    |||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||    
T  3935154 tacttgttcactgtgactcactgaagtctgtattgttcccttcaacagttgctgaacaattcaagga 3935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 3921691 - 3921872
Alignment:
Q  200 attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat 299  Q
    ||||||| ||||| ||||||||||||||||||||| || |||||| || || |||||| |||||||||||||||||||| |||||| |||||| ||||||    
T  3921691 attgagagcatacattcaagcatcaagaatcttacaagactaagaaaattatacatacgattttccaacaagcttctggttctacccgagcttccttcat 3921790  T
Q  300 cagttgaaattctacttgttg---actgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    ||||||||| |||||||||||   ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  3921791 cagttgaaagtctacttgttgacaactgtgaatcactaaagactgtattgttcccttcaacagttgctgaacaattcaagga 3921872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 3808563 - 3808399
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808563 catcatcttttggatgtcaaagcaatctagaaaccctgaatttaagttacactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 3808464  T
Q  112 aaagttacacataggcggttgctcaaagattctggctctacccgaccttcctgtatcagttgaaa 176  Q
    ||| ||| |||||   ||||||  |||| ||||| |||||||||| ||||||  |||||||||||    
T  3808463 aaaattagacatacaaggttgcaaaaagcttctgtctctacccgagcttccttcatcagttgaaa 3808399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 3985520 - 3985370
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    ||||||| ||||||||||||||||||||||||||||||  |||| || | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3985520 catcatcttttggatgtcaaagcaagctagaaaccctggttttaagaggtactcaaattgagagcataccttcaagcatcaaggatcttacaagactaag 3985421  T
Q  112 aaagttacacataggcggttgctcaaagattctggctctacccgaccttcc 162  Q
    ||| ||| ||||| ||| ||||||  || ||||||||||||| || |||||    
T  3985420 aaaattagacataagcgattgctcggagcttctggctctacctgagcttcc 3985370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 200 - 378
Target Start/End: Complemental strand, 4023540 - 4023362
Alignment:
Q  200 attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat 299  Q
    ||||||| ||||||||||||||||||||||||||| || |||||| || ||||||||| ||||| |   ||||| |||| |||||| |||||| ||||||    
T  4023540 attgagagcataccttcaagcatcaagaatcttacaagactaagaaaattagacatacgattttgctcaaagctcctggttctacccgagcttccttcat 4023441  T
Q  300 cagttgaaattctacttgttgactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    ||||||||| |||||||||||| |||   ||||| ||||||||||||||||||||||| ||| |||||||||| |||||    
T  4023440 cagttgaaactctacttgttgaatgtagatcactgaagactgtattgttcccttcaacagtttctgaacaattcaagga 4023362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 378
Target Start/End: Complemental strand, 3808534 - 3808326
Alignment:
Q  173 gaaatcctggatttaagttctagtaacattgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagc 272  Q
    |||| |||| |||||||||  | ||| ||||||| ||||||||||||||||||| ||||||| || |||||| || |||||||||||  || ||| ||||    
T  3808534 gaaaccctgaatttaagttacactaaaattgagagcataccttcaagcatcaaggatcttacaagactaagaaaattagacatacaaggttgcaaaaagc 3808435  T
Q  273 ttctggctctacctgagctttcttcatcagttgaaattctacttgtt---gactgtgactcactaaagactgtattgttcccttcaaccgttgctgaaca 369  Q
    ||||| ||||||| |||||| ||||||||||||||| ||||||||||     ||||   ||||| ||||||||||||||||||||||| |||||||||||    
T  3808434 ttctgtctctacccgagcttccttcatcagttgaaactctacttgttagcagctgtagatcactgaagactgtattgttcccttcaacagttgctgaaca 3808335  T
Q  370 attaaagga 378  Q
    ||| |||||    
T  3808334 attcaagga 3808326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 378
Target Start/End: Complemental strand, 4000653 - 4000446
Alignment:
Q  171 ttgaaatcctggatttaagttctagtaacattgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaa 270  Q
    |||||||||||| ||||||    ||| | ||||||||||||||||| |||||| |||||||||| || |||||| || ||||||||| || || |   ||    
T  4000653 ttgaaatcctggttttaagaaagagtgaaattgagatcataccttctagcatccagaatcttacaagactaagaaaattagacatacgatattgcttaaa 4000554  T
Q  271 gcttctggctctacctgagctttcttcatcagttgaaattctacttgttgactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaa 370  Q
    ||||||||||||||||| |||| ||| ||||||||||| |||||||||||| |||   ||||| |||||||||||||||||||||||  || ||||||||    
T  4000553 gcttctggctctacctgtgcttcctttatcagttgaaactctacttgttgaatgtatatcactgaagactgtattgttcccttcaacaatttctgaacaa 4000454  T
Q  371 ttaaagga 378  Q
    || |||||    
T  4000453 ttcaagga 4000446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 200 - 378
Target Start/End: Complemental strand, 3816081 - 3815900
Alignment:
Q  200 attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat 299  Q
    ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| |  || |   |||||| ||||| |||| |||||| ||||||    
T  3816081 attgagatcataccttcaagcatcaagaatcttacaagactaagaaaactagacatacgaggttgcttgaagcttgtggctttacccgagcttccttcat 3815982  T
Q  300 cagttgaaattctacttgtt---gactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    ||||||||| ||||||||||   || | |   ||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  3815981 cagttgaaactctacttgttaaagattctttttcactgaagactgtattgttcccttcaacagttgctgaacaattcaagga 3815900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 378
Target Start/End: Complemental strand, 3985464 - 3985286
Alignment:
Q  200 attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat 299  Q
    ||||||| ||||||||||||||||||| ||||||| || |||||| || ||||||||     || |    ||||||||||||||||||||||| | ||||    
T  3985464 attgagagcataccttcaagcatcaaggatcttacaagactaagaaaattagacataagcgattgctcggagcttctggctctacctgagcttccatcat 3985365  T
Q  300 cagttgaaattctacttgttgactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    || |||||| |||||||||||||||||  ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||    
T  3985364 cacttgaaactctacttgttgactgtgtgtcactgaagtctgtatttttcccttcaacagttgctgaacaattaaagga 3985286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 4023596 - 4023432
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    ||||||| |||||||||||||||| ||||||||  |||  |||| |||  | | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4023596 catcatcttttggatgtcaaagcaggctagaaatactggttttaagatacagtgaaattgagagcataccttcaagcatcaagaatcttacaagactaag 4023497  T
Q  112 aaagttacacataggcggttgctcaaagattctggctctacccgaccttcctgtatcagttgaaa 176  Q
    ||| ||| ||||| |   |||||||||| | |||| ||||||||| ||||||  |||||||||||    
T  4023496 aaaattagacatacgattttgctcaaagctcctggttctacccgagcttccttcatcagttgaaa 4023432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 354
Target Start/End: Original strand, 3957152 - 3957306
Alignment:
Q  200 attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat 299  Q
    ||||||| |||||| || |||||||||||||| || || |||||| || ||||||||| ||||| |   |||||| |||||||||| |||||| ||||||    
T  3957152 attgagagcataccgtcgagcatcaagaatctcacaagactaagaaaattagacatacgattttgctcaaagcttgtggctctacccgagcttccttcat 3957251  T
Q  300 cagttgaaattctacttgttgactgtgactcactaaagactgtattgttcccttc 354  Q
    ||||||||| |||||||||||| ||||| ||| | ||||||||||| ||||||||    
T  3957252 cagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttcccttc 3957306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 3921635 - 3921747
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| |    ||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  3921635 catcatcttttggatgtcaaagcaatctagaaaccctgaatttaagtgacactgaaattgagagcatacattcaagcatcaagaatcttacaagactaag 3921734  T
Q  112 aaagttacacata 124  Q
    ||| ||| |||||    
T  3921735 aaaattatacata 3921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 3957096 - 3957260
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    ||||||| ||||||| || | |||||||||||| |||| |||||| ||  |||  ||||||||||||||| || ||||||||| |||| |||||||||||    
T  3957096 catcatcttttggatttctaggcaagctagaaatcctggatttagtattcactgcaattgagagcataccgtcgagcatcaagaatctcacaagactaag 3957195  T
Q  112 aaagttacacataggcggttgctcaaagattctggctctacccgaccttcctgtatcagttgaaa 176  Q
    ||| ||| ||||| |   |||||||||| || ||||||||||||| ||||||  |||||||||||    
T  3957196 aaaattagacatacgattttgctcaaagcttgtggctctacccgagcttccttcatcagttgaaa 3957260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 3816137 - 3815973
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    ||||||| |||||||||||||| ||||||||||  |||  |||| |||  | | | ||||||| ||||||||||||||||||| ||||||||||||||||    
T  3816137 catcatcttttggatgtcaaagaaagctagaaatactggttttaagatacagtgatattgagatcataccttcaagcatcaagaatcttacaagactaag 3816038  T
Q  112 aaagttacacataggcggttgctcaaagattctggctctacccgaccttcctgtatcagttgaaa 176  Q
    |||  || ||||| | |||||||  ||| || ||||| ||||||| ||||||  |||||||||||    
T  3816037 aaaactagacatacgaggttgcttgaagcttgtggctttacccgagcttccttcatcagttgaaa 3815973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 4000680 - 4000516
Alignment:
Q  12 catcatcatttggatgtcaaagcaagctagaaaccctgaatttaggatggactaaaattgagagcataccttcaagcatcaaggatcttacaagactaag 111  Q
    |||||| |||| |||||||||||||||| |||| ||||  |||| ||  || | ||||||||| ||||||||| |||||| || ||||||||||||||||    
T  4000680 catcattatttagatgtcaaagcaagcttgaaatcctggttttaagaaagagtgaaattgagatcataccttctagcatccagaatcttacaagactaag 4000581  T
Q  112 aaagttacacataggcggttgctcaaagattctggctctacccgaccttcctgtatcagttgaaa 176  Q
    ||| ||| ||||| |   ||||| |||| ||||||||||||| |  |||||| ||||||||||||    
T  4000580 aaaattagacatacgatattgcttaaagcttctggctctacctgtgcttcctttatcagttgaaa 4000516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 3800230 - 3800156
Alignment:
Q  304 tgaaattctacttgttgactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    ||||| |||||||||| ||| | | ||||| ||  ||||||||||||||||||| ||||||| ||||||||||||    
T  3800230 tgaaactctacttgttcactataagtcactgaatgctgtattgttcccttcaacagttgctggacaattaaagga 3800156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 4217203 - 4217129
Alignment:
Q  304 tgaaattctacttgttgactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    ||||| |||||||||| ||| | | ||||| ||  ||||||||||||||||||| ||||||| ||||||||||||    
T  4217203 tgaaactctacttgttcactataagtcactgaatgctgtattgttcccttcaacagttgctggacaattaaagga 4217129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 3936823 - 3936858
Alignment:
Q  343 attgttcccttcaaccgttgctgaacaattaaagga 378  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3936823 attgttcccttcaacagttgctgaacaattaaagga 3936858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 378
Target Start/End: Complemental strand, 13396310 - 13396132
Alignment:
Q  200 attgagatcataccttcaagcatcaagaatcttacgaggctaagagaactagacatacaattttccaacaagcttctggctctacctgagctttcttcat 299  Q
    |||||||  ||||||||||||||||  ||||||||  | | ||||| ||||||||||||||| | |   |||||||||||| |||||| |||| ||||||    
T  13396310 attgagagtataccttcaagcatcatcaatcttacacgacgaagagtactagacatacaattctgctcaaagcttctggctgtacctgtgcttccttcat 13396211  T
Q  300 cagttgaaattctacttgttgactgtgactcactaaagactgtattgttcccttcaaccgttgctgaacaattaaagga 378  Q
    || |||||| |||| ||||||| ||| | ||||| ||| ||||| ||||||||||||  ||| | |||||||| |||||    
T  13396210 cacttgaaactctaattgttgaatgtaagtcactgaagtctgtagtgttcccttcaaaagttaccgaacaattcaagga 13396132  T

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