View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_11 (Length: 362)
Name: NF16052_low_11
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 2 - 346
Target Start/End: Complemental strand, 41218775 - 41218431
Alignment:
| Q |
2 |
ataagattctaggatgctaatagtttttcctaatcattcaactgtttctttacaataagccaaatataaattgtttttctgctagatcatgttatcgtgc |
101 |
Q |
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| T |
41218775 |
ataagattctaggatgctaatagtttttcttaatcattcaactgtttctttacaataagccaaatataaattgtttttctgctagatcatgttatcgtgc |
41218676 |
T |
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| Q |
102 |
agtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaaataacaaaagtcaattagaa |
201 |
Q |
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| T |
41218675 |
agtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaaataacaaaagtcaattagaa |
41218576 |
T |
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| Q |
202 |
actactgtctgagattctgttacttcgactcatagttatacttgttactagagatgaaaaataggactcccatttatgctataagctagcttattaatgg |
301 |
Q |
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| T |
41218575 |
actactgtctgagattctgttacttcgactcatagttatacttgttactagagatgaaaaataggactcccatttatgctataagctagcttattaatgg |
41218476 |
T |
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| Q |
302 |
ctaggctttagaagttctctactttctctggatgaaccactcttt |
346 |
Q |
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| T |
41218475 |
ctaggctttagaagttctctactttctctggatgaactactcttt |
41218431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 41224069 - 41224023
Alignment:
| Q |
247 |
tactagagatgaaaaataggactcccatttatgctataagctagctt |
293 |
Q |
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| T |
41224069 |
tactagaaatgaaaaatgggattcccatttatgctataagctagctt |
41224023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 41224196 - 41224157
Alignment:
| Q |
120 |
tatatgatggaaattgcattcattcttgatatgaattaat |
159 |
Q |
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| T |
41224196 |
tatatgatggaaattacattcattcttgatatgaaataat |
41224157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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