View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16052_low_12 (Length: 313)
Name: NF16052_low_12
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 38599256 - 38599456
Alignment:
| Q |
13 |
attattctaggatcaatgatataaagacataggttgtttgagaaaatttatagctacgtgaacactgttttctcttgatagttttatttttatgcaaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38599256 |
attattctaggatcaatgatataaagacataggttgtttgagaaaatttatagctacgtgaacactgttttctcttgatagttttatttttatgcaaaag |
38599355 |
T |
|
| Q |
113 |
ttattgtttaaaggat---atataagcaatgcatagttcacaaattagcaacaaaccggaaagg--nnnnnnnccactagaaatattttattgtttctag |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38599356 |
ttattgtttaaaggatataatataagcaatgcatagttcacaaattagcaacaaaccggaaaggtttttttttccactagaaatattttattgtttctag |
38599455 |
T |
|
| Q |
208 |
t |
208 |
Q |
| |
|
| |
|
|
| T |
38599456 |
t |
38599456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 38599497 - 38599612
Alignment:
| Q |
181 |
ccactagaaatattttattgtttctagttcccttcgaatatgaactcatgacaaggccagagatcaaaaagctgctagtctcatagttgttctacagtgc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
38599497 |
ccactagaaatattttattgtttctagttcccttcgaatatgaactcatgacaaggccagacatcaaaaagttgctagtctcatagttgttctacggtgc |
38599596 |
T |
|
| Q |
281 |
attatagatatcaagt |
296 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38599597 |
attatagatatcaagt |
38599612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 2829737 - 2829701
Alignment:
| Q |
15 |
tattctaggatcaatgatataaagacataggttgttt |
51 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
2829737 |
tattctagcatcaatgatatgaagacataggttgttt |
2829701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 56425211 - 56425068
Alignment:
| Q |
14 |
ttattctaggatcaatgatataaagacataggttgtttgagaaaatttatagctacgtgaacactgtttt-ctcttgatagttttatttttatgcaaaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
56425211 |
ttattctaggatcaatgatataaagacatagtttgtttgagaaaatttatcgctacctaaacactgttttatttttgatagttttatttttatgcaaaag |
56425112 |
T |
|
| Q |
113 |
ttattgtttaaaggatatataagcaatgcatagttcacaaattag |
157 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
56425111 |
tgattgtttaaaggatatat-agcaatgcagagttcacaaattag |
56425068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 39492848 - 39492774
Alignment:
| Q |
216 |
gaatatgaactcatgacaaggccagagatcaaaaagctgctagtctcatagttgttctacagtgcattatagata |
290 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39492848 |
gaatatgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagata |
39492774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 39131556 - 39131630
Alignment:
| Q |
216 |
gaatatgaactcatgacaaggccagagatcaaaaagctgctagtctcatagttgttctacagtgcattatagata |
290 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||| |||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
39131556 |
gaatgtgaactcaggacaaggccagagatcaagaagttgcttgtctcatagctgttctacaatgcattatagata |
39131630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 39469361 - 39469435
Alignment:
| Q |
216 |
gaatatgaactcatgacaaggccagagatcaaaaagctgctagtctcatagttgttctacagtgcattatagata |
290 |
Q |
| |
|
|||| |||||||| || ||||| | ||||||| ||| |||||||||||| | ||||||||| |||||| |||||| |
|
|
| T |
39469361 |
gaatgtgaactcaggaaaaggctaaagatcaagaagttgctagtctcattgctgttctacaatgcattgtagata |
39469435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University