View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_14 (Length: 305)
Name: NF16052_low_14
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 46063413 - 46063128
Alignment:
| Q |
11 |
atgaattgtatataaatttaagagtcccctattctaactgcttgtatggtcaggatgactgaagagattgctcagctgaaagaagaagttgagatgcaca |
110 |
Q |
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| T |
46063413 |
atgaatagtatataaatttaagagtcctctattctaactgcttgaatggtcaggatgattgaagagattgcacagctgaaagaagaagttgagatgcaca |
46063314 |
T |
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| Q |
111 |
gggaggaaagatcaaggtagatactttcactcgtttacattttgcagtattgcttgacttctacgagctggcagtacgtagtagatcactctaatttgat |
210 |
Q |
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| T |
46063313 |
gggaggaaagatcaaggtagatacttttactcgtttacattttgcagtattgcttgacttctacgagctggcagtacgtagtagatcactctaatttgat |
46063214 |
T |
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| Q |
211 |
gctgtggttcatctccnnnnnnngttacttcaaggtctcagtcacaggaagaagaccttaacagccccgagaaggattttgatgat |
296 |
Q |
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| T |
46063213 |
gctgtggttcatctcctttttttgttacttcaaggtctcagtcacaggaagaagaccttaacagccccgagaaggattttgatgat |
46063128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 46058768 - 46058487
Alignment:
| Q |
14 |
aattgtatataaatttaagagtcccctattctaactgcttgtatggtcaggatgactgaagagattgctcagctgaaagaagaagttgagatgcacaggg |
113 |
Q |
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|||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
46058768 |
aattgtatataactttaagagtcc--tattctaaccgcttgtatggtcaggatgactgaggagattgcacagctgaaagaagaagttgcgatgcacaggg |
46058671 |
T |
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| Q |
114 |
aggaaagatcaaggtagatactttcactcgtttacattttgcagtattgcttgacttctacgagctggcagta-cgtagtagatcactctaatttgatgc |
212 |
Q |
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|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
46058670 |
aggaaaaatcaaggtaaatacttttactcgtttacattttgcagtattgcttgacttctacgagctggcagtaccatagtagatcactctaatttgatgc |
46058571 |
T |
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| Q |
213 |
tgtggttcatctccnnnnnnngttacttcaaggtctcagtcacaggaagaagaccttaacagccccgagaaggattttgatgat |
296 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
46058570 |
tgtgtttcatctcccattttttttacttcaaggtctcagtcacaggaagaagaccttaacatccccgagaagggttttgatgat |
46058487 |
T |
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