View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16052_low_19 (Length: 252)
Name: NF16052_low_19
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_19 |
 | |
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| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
| | |
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| [»] scaffold0419 (1 HSPs) |
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| [»] scaffold0277 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 3280145 - 3280380
Alignment:
| Q |
17 |
aatgaatttgatttgtaataataaaaagtataattatcaatacattgaatgtcttatatttacaaaaacttatatgattgggcaggaatgaatatcaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3280145 |
aatgaatttgatttgtaataataaaaagtataattatcaatacattgaatgtcttatatttacaaaaacttatatgattgggcaggaatgaatatcaata |
3280244 |
T |
|
| Q |
117 |
caagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtcctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3280245 |
caagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtcctt |
3280344 |
T |
|
| Q |
217 |
aaagtaaattcacttctagaagttgcatctaattat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
3280345 |
aaagtaaattcacttctagaagttgcatctaattat |
3280380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 249
Target Start/End: Complemental strand, 28098094 - 28097907
Alignment:
| Q |
62 |
tgaatgtcttatatttacaaaaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaa |
161 |
Q |
| |
|
|||||||| ||||||||| |||||||| | ||||| |||||||| |||| ||| | ||||||| |||| ||||||||| ||||||||||||| | || |
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|
| T |
28098094 |
tgaatgtcatatatttactcaaacttatcttattggccaggaatggatatgaattcgagtttattcgggaaatagtcaaatatgtatccaacaaattgaa |
28097995 |
T |
|
| Q |
162 |
tcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaat |
249 |
Q |
| |
|
|| || | |||||||||||| |||||||| |||||| | || |||||| | |||||||| ||||||||| |||||| ||||||| |
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|
| T |
28097994 |
tcatgtccttttacatgttgttgattaccccgttggcctacaacatcgagttttaaaagtaaactcacttctaaaagttggatctaat |
28097907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 28297371 - 28297220
Alignment:
| Q |
82 |
aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg |
181 |
Q |
| |
|
|||||||| ||||||| ||||||| |||| |||| ||||||| | | | ||||||||| | ||||||| |||||| ||||||| ||||||| |||||| |
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|
| T |
28297371 |
aaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttg |
28297272 |
T |
|
| Q |
182 |
tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttct |
233 |
Q |
| |
|
||||||||| ||||| | |||||| | ||||| |||||||||||| |||| |
|
|
| T |
28297271 |
ccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttct |
28297220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 28514702 - 28514853
Alignment:
| Q |
82 |
aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg |
181 |
Q |
| |
|
|||||||| ||||||| ||||||| |||| |||| ||||||| | | | ||||||||| | ||||||| |||||| ||||||| ||||||| |||||| |
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|
| T |
28514702 |
aaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttg |
28514801 |
T |
|
| Q |
182 |
tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttct |
233 |
Q |
| |
|
||||||||| ||||| | |||||| | ||||| |||||||||||| |||| |
|
|
| T |
28514802 |
ccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttct |
28514853 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 28150495 - 28150580
Alignment:
| Q |
150 |
caacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctag |
235 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| |||||||| |||||| |||||| |||||||| | ||||||||||||||||| |
|
|
| T |
28150495 |
caacaagattagtcgtgtccctttacatgttgttgattaccctgttggcctgcagtgtcgagtcccaatagtaaattcacttctag |
28150580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 28227507 - 28227670
Alignment:
| Q |
86 |
ttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcga |
185 |
Q |
| |
|
|||| |||||||| ||||||| ||| ||| | ||||||| | | | ||||||||| || |||| |||||||| |||| || |||||||||||||| ||| |
|
|
| T |
28227507 |
ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccga |
28227606 |
T |
|
| Q |
186 |
ttacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaat |
249 |
Q |
| |
|
|||||| ||||| | | ||| | ||||| ||||||||||||||| | || |||| ||||||| |
|
|
| T |
28227607 |
ttaccctgttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaat |
28227670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 28140149 - 28140214
Alignment:
| Q |
145 |
gtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcga |
210 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
28140149 |
gtatcgaacaagataaatcgtactcctttacatgttgcggattacccggttggaatagagtctcga |
28140214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 26937649 - 26937731
Alignment:
| Q |
151 |
aacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttct |
233 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||| ||||| ||||||||||| | || |||||||||| ||||| |
|
|
| T |
26937649 |
aacaagatcaatcgtcctcctttacatgttgcggattaccccgttggactgcagtctcgattgctacaagtaaattctcttct |
26937731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 28185944 - 28186093
Alignment:
| Q |
82 |
aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg |
181 |
Q |
| |
|
|||||||| | |||||| ||||||| ||| || || ||||||| | | | ||||||||| ||||||| |||||||| |||| || ||||||| |||||| |
|
|
| T |
28185944 |
aaacttattttattgggtaggaatggctatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttg |
28186043 |
T |
|
| Q |
182 |
tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcactt |
231 |
Q |
| |
|
|||| ||| ||||| || ||||| | || || ||||||||||||||| |
|
|
| T |
28186044 |
ctgatttccctgttggtatcgagtctagggttctaaaagtaaattcactt |
28186093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 28786815 - 28786919
Alignment:
| Q |
108 |
atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct |
207 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| | | ||||||||||| | |||| || |||||||||| | ||||||| ||||| |||||||| |
|
|
| T |
28786815 |
atatgaatacaagtttattggagatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattgcagtct |
28786914 |
T |
|
| Q |
208 |
cgagt |
212 |
Q |
| |
|
||||| |
|
|
| T |
28786915 |
cgagt |
28786919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 28792936 - 28793040
Alignment:
| Q |
108 |
atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct |
207 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| | | ||||||||||| | |||| || |||||||||| | ||||||| ||||| |||||||| |
|
|
| T |
28792936 |
atatgaatacaagtttattggagatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattgcagtct |
28793035 |
T |
|
| Q |
208 |
cgagt |
212 |
Q |
| |
|
||||| |
|
|
| T |
28793036 |
cgagt |
28793040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 57913 - 57774
Alignment:
| Q |
94 |
ttgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccgg |
193 |
Q |
| |
|
||||| ||||||| |||| ||| | ||||||| | | | ||||||||| ||||||| |||||||| |||| || ||||||| |||||| ||||||||| | |
|
|
| T |
57913 |
ttgggtaggaatggatatgaatgcgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgccgattaccctg |
57814 |
T |
|
| Q |
194 |
ttggcatgcagtctcgagtccttaaagtaaattcacttct |
233 |
Q |
| |
|
|||| || | ||| | ||||| ||||||||||||||||| |
|
|
| T |
57813 |
ttggtatcgaatctagggtcctaaaagtaaattcacttct |
57774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 28005 - 28168
Alignment:
| Q |
86 |
ttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcga |
185 |
Q |
| |
|
|||| |||||||| ||||||| ||| ||| | ||||||| | | | ||||||||| || |||| |||||||| |||| || |||||||||||||| ||| |
|
|
| T |
28005 |
ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccga |
28104 |
T |
|
| Q |
186 |
ttacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaat |
249 |
Q |
| |
|
|||||| ||||| | | ||| | ||||| ||||||||||||||| | || |||| ||||||| |
|
|
| T |
28105 |
ttaccctgttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaat |
28168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 18699001 - 18698897
Alignment:
| Q |
108 |
atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct |
207 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| | || ||||||||||| | |||| || |||||||||| | ||||||| ||||| |||||||| |
|
|
| T |
18699001 |
atatgaatacaagtttattggagatatagtcaaatacgtctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattgcagtct |
18698902 |
T |
|
| Q |
208 |
cgagt |
212 |
Q |
| |
|
||||| |
|
|
| T |
18698901 |
cgagt |
18698897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 5090533 - 5090469
Alignment:
| Q |
133 |
atagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttgg |
197 |
Q |
| |
|
||||||| | |||| ||||||||||| |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
5090533 |
atagtcacatatgtctccaacaagatcaatcacactcctttacatgttgctgattacccggttgg |
5090469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 8064 - 8168
Alignment:
| Q |
108 |
atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct |
207 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| | | ||||||||||| | |||| || |||||||||| | ||||||| ||||| | |||||| |
|
|
| T |
8064 |
atatgaatacaagtttattggcgatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattacagtct |
8163 |
T |
|
| Q |
208 |
cgagt |
212 |
Q |
| |
|
||||| |
|
|
| T |
8164 |
cgagt |
8168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 13280 - 13176
Alignment:
| Q |
108 |
atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct |
207 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| | | ||||||||||| | |||| || |||||||||| | ||||||| ||||| | |||||| |
|
|
| T |
13280 |
atatgaatacaagtttattggcgatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattacagtct |
13181 |
T |
|
| Q |
208 |
cgagt |
212 |
Q |
| |
|
||||| |
|
|
| T |
13180 |
cgagt |
13176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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