View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16052_low_20 (Length: 250)
Name: NF16052_low_20
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 31070938 - 31071110
Alignment:
| Q |
68 |
agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31070938 |
agagttgctatacggtacgacaagttaacatacgaatttgcacggcactttcaactaaaggtggtattctcttttaatgggtactaccttacaatattt- |
31071036 |
T |
|
| Q |
168 |
atataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct |
242 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31071037 |
-tataataaaacataaacttggcgattatataaacgtttagagaagcaaaacagtgatatacattcttctttgct |
31071110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 229547 - 229445
Alignment:
| Q |
68 |
agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt |
167 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229547 |
agagttgttatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt |
229448 |
T |
|
| Q |
168 |
ata |
170 |
Q |
| |
|
||| |
|
|
| T |
229447 |
ata |
229445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 50525699 - 50525776
Alignment:
| Q |
68 |
agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat |
145 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50525699 |
agagttgctatacggtacgacaagttaaaacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat |
50525776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 229148 - 229077
Alignment:
| Q |
171 |
taataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
229148 |
taataaaacataaacttggctattatataaacgtctagagaagcaaaacagttatatacattcttctttgct |
229077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 50525786 - 50525837
Alignment:
| Q |
191 |
tattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50525786 |
tattatataaacgtctagagaagcaaaacagtgatatacattcttctttgct |
50525837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 5590774 - 5590640
Alignment:
| Q |
68 |
agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt |
167 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| |||| | | ||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
5590774 |
agagttgctatacggtacgacaaatcaacacacgaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgctaccttacaatattt- |
5590676 |
T |
|
| Q |
168 |
atataataaaacataaacttggctattatataaacgt |
204 |
Q |
| |
|
||||||||||||| | | ||| || ||||||||||| |
|
|
| T |
5590675 |
-tataataaaacatcatcctggttaatatataaacgt |
5590640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 27405084 - 27405189
Alignment:
| Q |
128 |
gtggtattctcttttaatgggtactaccttacaatattttatataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatat |
227 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||| || ||||||||||| |||||||| |||| |||||| |
|
|
| T |
27405084 |
gtggtattctcttttaatgggtgctaccttacaatattt--tataataaaacatcaacatggttaatatataaacgtttagagaaggcaaacggtgataa |
27405181 |
T |
|
| Q |
228 |
acattctt |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
27405182 |
acattctt |
27405189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 38919564 - 38919666
Alignment:
| Q |
68 |
agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt |
167 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||||||||| |||| | | ||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
38919564 |
agagttgctatacgatacgacaagtcaacacacaaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgttaccttacaatatttt |
38919663 |
T |
|
| Q |
168 |
ata |
170 |
Q |
| |
|
||| |
|
|
| T |
38919664 |
ata |
38919666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 38130527 - 38130442
Alignment:
| Q |
96 |
cacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatattttatataataaaacataa |
183 |
Q |
| |
|
||||||||||||||||| || ||||||| | ||| |||||||||||||| | |||| ||| ||||||| ||||||||||||||| |
|
|
| T |
38130527 |
cacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattataatattt--tataataaaacataa |
38130442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University