View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_21 (Length: 240)
Name: NF16052_low_21
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 48950182 - 48949946
Alignment:
| Q |
14 |
attatactgatactcgcttctacatgcacaagacgtataagagagctatagttttagattactactttatttataagttttcttacatgaaattcaatta |
113 |
Q |
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| T |
48950182 |
attatattgatactcgcttctacatgcacaagacatataagagagctatagttttagattactactttatttataagttttcttacatgaaattcaatta |
48950083 |
T |
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| Q |
114 |
tggt----------gaaccatcaacaatgaaatgctgttttatacagaaaaacatgcatatgataaataagctaattacgcccaaaaaatgataataagc |
203 |
Q |
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| T |
48950082 |
tggtaaattgatttgaaccatcaacaatgaaatgctgttttatacagaaaaacatgcatatgataaataagctaattacgcccaaaaaatgataataagc |
48949983 |
T |
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| Q |
204 |
tttgtttggaaacagtgaaatgaacgtcctattagtt |
240 |
Q |
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| T |
48949982 |
tttgtttggaaacagtgaaatgaacgtcctattagtt |
48949946 |
T |
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