View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_23 (Length: 238)
Name: NF16052_low_23
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 44436596 - 44436359
Alignment:
| Q |
1 |
tcactatatagatttattcatgtcccatgcatgggtgaacaagtacacaaactacgataaattatagaggctacatacatgtgcacatttatcaaggact |
100 |
Q |
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| T |
44436596 |
tcactgtatagatttattcatgtctcatgcatgggtgaacaagtaaacaaactacgataaattatggaggctacatacatgtacacatttatcaaggact |
44436497 |
T |
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| Q |
101 |
aatggcaatttgattctcatgatgatgcaaccatataattaattgacttcactgctacatgggcataagtgtcgagaaaagttggctttaagtagcggtt |
200 |
Q |
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| T |
44436496 |
aatggcaatttgattctcatgatgatgcaaccatataattaattgacttcactgctacatgggcataagtgtcgagaaaagttggctttaagtagtggtt |
44436397 |
T |
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| Q |
201 |
acaatttgaattctcagagatgttattcgagtaatgtc |
238 |
Q |
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| T |
44436396 |
acaatttgaattctcagagatgttattcgagtaatgtc |
44436359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 44416916 - 44416827
Alignment:
| Q |
135 |
ataattaattgacttcactgctacatgggcataa------gtgtcgagaaaagttggctttaagtagcggttacaatttgaattctcaga |
218 |
Q |
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| T |
44416916 |
ataattaattgacttcactgctacatgggcataaattcacgtgtcgagaaaagttggctttaggtagtggtcaaaatttgaattctcaga |
44416827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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