View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_3 (Length: 549)
Name: NF16052_low_3
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 105 - 544
Target Start/End: Complemental strand, 39269473 - 39269042
Alignment:
| Q |
105 |
aaattttattgaaccaaagaaagaaatacaaggaattctttttgttaaaaattagtnnnnnnnnnnnnnnt-tggaatatgtttttgtaatgt-aatact |
202 |
Q |
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| T |
39269473 |
aaattttattgaaccaaagaaagaaatacatggaattctttcagttaaaaattagtaaaaataaaaaaaaaatggaatatgtttttgtaattttaactcc |
39269374 |
T |
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| Q |
203 |
aactttcaaataactttggtactcgtcgtcttccgtgttcttccctcctggtaggtagtatttcttaatattaacatcggtaatcaatctatacattaat |
302 |
Q |
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| T |
39269373 |
aactttcaaataactttggt-----tggtactc-gtgttcttccctcctggtag----tatttcttaatattaacatcggtaatcaatctatacattaat |
39269284 |
T |
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| Q |
303 |
attaggagggtttcaaaaccctaaaatcgatatgtgactcaattttcttgttttattacagttgtagaagtagctaatgaagcttcactccatcgattta |
402 |
Q |
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| T |
39269283 |
attacgagggtttcaaaaccctaaaatcgatatgtgactcaattttcttgttttattacagttgtagaagtagctaatgaagcttcactccatcgattta |
39269184 |
T |
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| Q |
403 |
agtagcaatggcgtttcaagactttgaaccaatctttgctgaacccaaactggagtggaaacctcactgttctcatcctttgcgtccttttttgttccat |
502 |
Q |
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| T |
39269183 |
agtagcaatggcgtttcaagactttgaaccaatctttgctgaacccaaactggagtggaaacctcactgttctcatcctttgcgtccttttttgttccat |
39269084 |
T |
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| Q |
503 |
gttcatcctcctgattcttctcaccttgtaattcatctcact |
544 |
Q |
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| T |
39269083 |
gttcatcctcctaattcttctcaccttgtaattcatgtcact |
39269042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 39270897 - 39270865
Alignment:
| Q |
36 |
aattgtcaagtaacttaaatttgtcatgtattt |
68 |
Q |
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| T |
39270897 |
aattgtaaagtaacttaaatttgtcatgtattt |
39270865 |
T |
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