View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_5 (Length: 531)
Name: NF16052_low_5
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 22634159 - 22634528
Alignment:
| Q |
18 |
gaactagcaagtagcaattgtgaagtttgaaattgtgttgagcataattttgttacacattttgagtcacatatatatttaagggtacatagtgtgattg |
117 |
Q |
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| T |
22634159 |
gaactagcaagtagcaattgtgaagtttgaaattgtgttgagcataattttgttacacattttgagtcacatatatatttaagggtacatagtgtgattg |
22634258 |
T |
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| Q |
118 |
caaaatcattgagggtcttgctaacgagtgtattaaagacatttattaaagaaatcaaatgtacatctattacattggaaacacaacatttgaaaaagtt |
217 |
Q |
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| T |
22634259 |
caaaatcgttcagggtcttgataacgagtgtattaaagacatttattaaagaaatcaaatgtacaccttttacat--------------ttgaaaaagtt |
22634344 |
T |
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| Q |
218 |
gaatacacaattttccaatataaaatttctatatttatatctttaagcgatcttttaaggacacttttaacatttctcaatacgtctaacaaagttaccc |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22634345 |
gaatacacaattttccaatgtaaaatttctatatttatatctttaagcgatcttttaaggacacttttaacatttctcaatacgtctaacaaagttaccc |
22634444 |
T |
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| Q |
318 |
tcaacacaaaatttcaaacttctcagttgctttttgggtggtgtgtgttttgcttttatcaggaaaaagcaagtgaaatgatac |
401 |
Q |
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| T |
22634445 |
tcaacacaaaatttcaaacttctcagttgcttttttggtggtgagtgttttgcttttatcaggaaaaagcaagtgaaatgatac |
22634528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 22634613 - 22634645
Alignment:
| Q |
486 |
aacaggaaaaagcagagtgctttgcatcttttt |
518 |
Q |
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| T |
22634613 |
aacaggaaaaagcagagtgctttgcatcttttt |
22634645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 45418894 - 45418851
Alignment:
| Q |
210 |
aaaaagttgaatacacaattttccaatataaaatttctatattt |
253 |
Q |
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|||||||||||||||||||||||||| | ||||||| ||||||| |
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| T |
45418894 |
aaaaagttgaatacacaattttccaacacaaaatttatatattt |
45418851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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