View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_6 (Length: 438)
Name: NF16052_low_6
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 164 - 422
Target Start/End: Original strand, 20083749 - 20084007
Alignment:
| Q |
164 |
ttctggagtaatacatgtatgcacatgcaaccacaaagtagctagtaataatttgtttctatgagtgagtttgaaaaattggagggaccatgaagtcata |
263 |
Q |
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| T |
20083749 |
ttctagagcaatacatgtatgcacatgcaaccacaaagtagctagtaataatttgtttctatgagtgagtttgaaaaattggagggaccatgaagtcata |
20083848 |
T |
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| Q |
264 |
aacacatgtcaaggcatccaaggacacaaatagaccatcatagacaagcaaatgttccaccacgccagtaaagacaagacaataattaaaaatgtgaatg |
363 |
Q |
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| T |
20083849 |
aacacatgtcaaggcatccaaggacacaaatagaccatcatagacaagcaaatgttccaccacgccagtaaagacaagacaataattaaaaatgtgaatg |
20083948 |
T |
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| Q |
364 |
cttggttaaatgatttttacatgaaagtgacccaaccctattttccttctaaagttatt |
422 |
Q |
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| T |
20083949 |
cttggttaaatgatttttacatgaaagtgacccaaccctattttccttctaaagttatt |
20084007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 20079197 - 20079367
Alignment:
| Q |
7 |
tcgaaaaatatctaaactgtgttcggattttataatccaatgaacatttttgtaaaa-caataggacgcatgagaagtagatagggtggaatagtctatc |
105 |
Q |
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| T |
20079197 |
tcgaaacacatctaaactgtgttcagattttataatccaatgaacatttttgtaaaaacaatagaaggcgtaagaaatagatagggtggaatagtctatc |
20079296 |
T |
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| Q |
106 |
ggttaaacagaggcaaagattatgtctagagtagagtataaatgccagtatttccaacttctggagtaata |
176 |
Q |
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| T |
20079297 |
ggttaaacagaggcaaatattatgtctagagtagagtataaatgccagtatttccaacttctagagtaata |
20079367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 20079381 - 20079426
Alignment:
| Q |
169 |
gagtaatacatgtatgcacatgcaaccacaaagtagctagtaataa |
214 |
Q |
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| T |
20079381 |
gagtaatacatgtatgcacatgcaaccacaaagtagctagtaataa |
20079426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 20083667 - 20083714
Alignment:
| Q |
106 |
ggttaaacagaggcaaagattatgtctagagtagagtataaatgccagtattt |
158 |
Q |
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| T |
20083667 |
ggttaaatagaggcaaagattatgtctaga-----gtataaatgccagtattt |
20083714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 38131492 - 38131528
Alignment:
| Q |
46 |
atgaacatttttgtaaaacaataggacgcatgagaag |
82 |
Q |
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| T |
38131492 |
atgaacatttttgtaaaataataggacgcgtgagaag |
38131528 |
T |
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