View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16052_low_9 (Length: 401)
Name: NF16052_low_9
Description: NF16052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16052_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 42315025 - 42315390
Alignment:
| Q |
18 |
ttctttcatcaacatcaactttgttatgtttacatttaatttcaatcaacactatgaaacacaatcacatactttaaacatgacattgatataaagtcta |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |
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| T |
42315025 |
ttctttcatcaacatgaactttgttatgtttacatttaatttcaatcaacactatgaaacacaattacagactttaaacaggacattgatataaagtcta |
42315124 |
T |
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| Q |
118 |
gatgtttttgtgacaattgtttattgtgtcttgtgttccagcctgacatcactgcacctggagtgaacataattgctgcttacacagaaatcaatagtga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42315125 |
gatgtttttgtgacaattgtttattgtgtcttgtgttccagccagacatcactgcacctggagtgaacataattgctgcttacacagaaa---------- |
42315214 |
T |
|
| Q |
218 |
atatgaaatcaatagaaggatttcgtacaaatccttgtctggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42315215 |
--------tcaatagaaggatttcgtacaaatccttgtctggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcat |
42315306 |
T |
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| Q |
318 |
cctaaatggagtccagcagctatcaaatcagctattatgaccacgggtacgacatcaattaatcatccaacctatttcaatttt |
401 |
Q |
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| T |
42315307 |
cctaaatggagtccagcagctatcaaatcagctattatgaccacgggtacgacatcaattaatcatccaacctatttcaatttt |
42315390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 42325003 - 42325094
Alignment:
| Q |
244 |
acaaatccttgtctggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagca |
335 |
Q |
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| T |
42325003 |
acaaatcattgtcatgaacttctttgtcaagcccccatgtgtctgacatactaggtcttctcaaaacacttcattctaaatggagtccagca |
42325094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 37016463 - 37016375
Alignment:
| Q |
258 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatc |
346 |
Q |
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|||||||| ||| | || |||||||| ||||||| | || |||||||| ||||||||||||| ||||||||||| || |||||||| |
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| T |
37016463 |
ggaacttcaatgtcttgtcctcatgttgctggcattgtcggtcttctcaagacacttcatcctagttggagtccagctgccatcaaatc |
37016375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 31049759 - 31049651
Alignment:
| Q |
258 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
357 |
Q |
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|||||||||||| | || |||||||| |||||| || || ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
31049759 |
ggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatga |
31049660 |
T |
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| Q |
358 |
ccacgggta |
366 |
Q |
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|||| |||| |
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| T |
31049659 |
ccacaggta |
31049651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 31062082 - 31061974
Alignment:
| Q |
258 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
357 |
Q |
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|||||||||||| | ||||||||||| |||| | || || ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
31062082 |
ggaacttctatgtcttgccctcatgttgctgggactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatga |
31061983 |
T |
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| Q |
358 |
ccacgggta |
366 |
Q |
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|||| |||| |
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| T |
31061982 |
ccactggta |
31061974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 31162655 - 31162547
Alignment:
| Q |
258 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
357 |
Q |
| |
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|||||||||||| | || |||||||| |||||| || || ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
31162655 |
ggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctatcatga |
31162556 |
T |
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| Q |
358 |
ccacgggta |
366 |
Q |
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|||| |||| |
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| T |
31162555 |
ccactggta |
31162547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 31202982 - 31203091
Alignment:
| Q |
258 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
357 |
Q |
| |
|
|||||||||||| | ||||||||||| | ||||| || || ||| |||||||| | |||||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
31202982 |
ggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacattgcatcctaattggagtccagcagctattaaatcagctatcatga |
31203081 |
T |
|
| Q |
358 |
ccacgggtac |
367 |
Q |
| |
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|||| ||||| |
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| T |
31203082 |
ccacaggtac |
31203091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 31144831 - 31144723
Alignment:
| Q |
258 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
357 |
Q |
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|||||||||||| | || |||||||| ||||| || || ||| ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||| |
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| T |
31144831 |
ggaacttctatgtcttgtcctcatgttgttggcactgctggacttatcaaaacacttcatcctaattggagtcctgcagctattaaatcagctatcatga |
31144732 |
T |
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| Q |
358 |
ccacgggta |
366 |
Q |
| |
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|||| |||| |
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| T |
31144731 |
ccactggta |
31144723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 31107207 - 31107145
Alignment:
| Q |
304 |
tcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatgaccacgggta |
366 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||| |
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| T |
31107207 |
tcaaaacacttcatcctaattggagtccagcagctattaaatcggctataatgaccactggta |
31107145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 24268666 - 24268766
Alignment:
| Q |
258 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
357 |
Q |
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||||||||||| ||||||||||||| |||| ||| | | |||||||||||| || ||||||| |||||||| |||||| | ||||| ||||| |||| |
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| T |
24268666 |
ggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaattggagtcctgcagcttttaaatctgctatcatga |
24268765 |
T |
|
| Q |
358 |
c |
358 |
Q |
| |
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| |
|
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| T |
24268766 |
c |
24268766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 42761440 - 42761397
Alignment:
| Q |
156 |
cagcctgacatcactgcacctggagtgaacataattgctgctta |
199 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
42761440 |
cagcctgacatcactgcaccaggagtcaacataattgcagctta |
42761397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 42736246 - 42736299
Alignment:
| Q |
313 |
ttcatcctaaatggagtccagcagctatcaaatcagctattatgaccacgggta |
366 |
Q |
| |
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|||||||| | |||||||||||||||||||| ||||| || |||||||| |||| |
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| T |
42736246 |
ttcatcctgattggagtccagcagctatcaagtcagcaatcatgaccacaggta |
42736299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 42715810 - 42715762
Alignment:
| Q |
151 |
tgttccagcctgacatcactgcacctggagtgaacataattgctgctta |
199 |
Q |
| |
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||||| ||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
42715810 |
tgttctagcctgacatcaccgcaccaggagtcgacataattgctgctta |
42715762 |
T |
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Back To:
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