View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16053_high_2 (Length: 473)

Name: NF16053_high_2
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16053_high_2
NF16053_high_2
[»] chr7 (1 HSPs)
chr7 (1-257)||(25527978-25528227)
[»] chr4 (3 HSPs)
chr4 (199-248)||(231998-232047)
chr4 (369-420)||(231655-231706)
chr4 (220-257)||(46707465-46707502)
[»] chr5 (1 HSPs)
chr5 (199-244)||(16689643-16689688)
[»] chr3 (1 HSPs)
chr3 (220-257)||(25329898-25329935)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 25527978 - 25528227
Alignment:
Q  1 tatatactacccccagcagaattgtcttaacacctttcttaattaaacctgtttagtttagtttgagaagatgaagtgtgtatctttttccttttcatta 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||       |||||    
T  25527978 tatatactaccaccagcagaattgtcttaacacctttcttaattaaacctgtttagtttagtttgagaagatgaagtgtatttatttt-------catta 25528070  T
Q  101 tgacttgcttgttttgacccatactaattatgacttgtattacatactctcttcagtggcattttagcgtgggaatggaaaagagttttccaccgaagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||   ||||    
T  25528071 tgacttgcttgttttgacccatactaattatgacttgtatttcatactcacttcagtggcattttagtgtgggaatggaaaagagttttccacacgagaa 25528170  T
Q  201 ttttaacgattatataaatgaggaacattgatcttatcatagtctctctgcattata 257  Q
    ||||||| |||||||||||||| || |||||| |||||||||| ||| |||||||||    
T  25528171 ttttaactattatataaatgagaaatattgattttatcatagtttctttgcattata 25528227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 232047 - 231998
Alignment:
Q  199 aattttaacgattatataaatgaggaacattgatcttatcatagtctctc 248  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  232047 aattttaaccattagataaatgaggaacattgatcttatcatagtctctc 231998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 231655 - 231706
Alignment:
Q  369 catgcaactcttccattaacatatattgggcttcttcttcactgaagcctct 420  Q
    ||||||||||||||||||||| || ||||||||||  ||| |||||||||||    
T  231655 catgcaactcttccattaacacattttgggcttctctttcgctgaagcctct 231706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 46707465 - 46707502
Alignment:
Q  220 gaggaacattgatcttatcatagtctctctgcattata 257  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  46707465 gaggaacattgattttatcatagtctttctgcattata 46707502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 16689643 - 16689688
Alignment:
Q  199 aattttaacgattatataaatgaggaacattgatcttatcatagtc 244  Q
    ||||||||| |||| ||||||||| |||||| ||||||||||||||    
T  16689643 aattttaactattagataaatgagaaacattaatcttatcatagtc 16689688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 25329935 - 25329898
Alignment:
Q  220 gaggaacattgatcttatcatagtctctctgcattata 257  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  25329935 gaggaacattgattttatcatagtctctctacattata 25329898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University