View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_high_7 (Length: 225)
Name: NF16053_high_7
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_high_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 4655976 - 4656202
Alignment:
| Q |
1 |
atgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagcctttttctcgttgcattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4655976 |
atgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagcctttttctcattgcattc |
4656075 |
T |
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| Q |
101 |
aagttttcaaattgacctcatacataatcttttgaccattttcaataacattcttttattct--tatttttacatttcagctaataattgtaccgatacc |
198 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| |
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| T |
4656076 |
aagttttcaaattgacctcatacataatattttgaccattttcaataacattcttttattcttgtattcttacatttcagctcataattgtaccgatata |
4656175 |
T |
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| Q |
199 |
tccgattgctcaagtaatgattgttcc |
225 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
4656176 |
tccgattgctcaagtaatcattgttcc |
4656202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 4647531 - 4647756
Alignment:
| Q |
1 |
atgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagccttttt-ctcgttgcatt |
99 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||| |
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| T |
4647531 |
atgaccaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagacttttttctcaccgtatt |
4647630 |
T |
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| Q |
100 |
caagttttcaaattgacctcatacataatcttttgaccattttcaataacattcttttattcttatttttacatttcagctaataattgtaccgatacct |
199 |
Q |
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| T |
4647631 |
caagttttcaaattgacctcatacataatcttctgaccattttcaataacattcttttattcttatttttacatttcagctaataattgtaccgatacct |
4647730 |
T |
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| Q |
200 |
ccgattgctcaagtaatgattgttcc |
225 |
Q |
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| T |
4647731 |
ccgattgctcaagtaatcattgttcc |
4647756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 23233451 - 23233497
Alignment:
| Q |
16 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgt |
62 |
Q |
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| T |
23233451 |
aagtttttttatactatgatcattttagtttccctatttcttgttgt |
23233497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31038191 - 31038244
Alignment:
| Q |
1 |
atgactaagttttttaagtttgtttatactatgttcattttaatttctctattt |
54 |
Q |
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|||| ||||||| |||||||||||||| |||| ||||||| |||||||||||| |
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| T |
31038191 |
atgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
31038244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 22815825 - 22815879
Alignment:
| Q |
16 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatg |
70 |
Q |
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||||||||||||| ||| || |||| |||||||||||||||||||||| ||||| |
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| T |
22815825 |
aagtttgtttatattatactcctttttatttctctatttcttgttgttatcaatg |
22815879 |
T |
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