View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_low_1 (Length: 597)
Name: NF16053_low_1
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 40678565 - 40678999
Alignment:
| Q |
14 |
cataggaagagacaattggcaatggagttgttagagaaagagaatttgtattatgaaaatgtgatggagctagaggattatgaagagagtggtggaggag |
113 |
Q |
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| T |
40678565 |
cataggaagagacaattggcaatggagttgttagagaaagagaatttgtattatgaaaatgtgatggagctagaggattatgaagagagtggtggaggag |
40678664 |
T |
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| Q |
114 |
agagttctatgggattggaggaggataatgctggtcatggttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaaggagcagttaa |
213 |
Q |
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| T |
40678665 |
agagttctatgggattggaggaggataatgctagtcatggttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaaggagcagttaa |
40678764 |
T |
|
| Q |
214 |
aaaggtgacaatgatccctgatagtagcagtttaaagatgcccaagatgtttaagccaactatgcctgatttctcaacatttcatgaagattaattaatt |
313 |
Q |
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| T |
40678765 |
aaaggtgacaatgatccctgatagtagcagtttaaagatgcccaagatgtttaagccaactatgcctgatttctcaacatttcatgaagattaattaatt |
40678864 |
T |
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| Q |
314 |
agttttgaagtctcatgaggactgaattatgaatgaggacaaaagtaatgcttg--------------atttgtatctaactagttgtacagaagcaatg |
399 |
Q |
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| T |
40678865 |
agttttgaagtctcatgaggactgaattatgaatgaggacaaaagtaatgcttgatttgtgtttcttaatttgtatctaactagttgtacagaagcaatg |
40678964 |
T |
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| Q |
400 |
atattttgtctcccgatt-ctttgattcccaccaa |
433 |
Q |
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| T |
40678965 |
atattttgtctccctattcctttgattcccaccaa |
40678999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 430 - 579
Target Start/End: Original strand, 40679042 - 40679191
Alignment:
| Q |
430 |
ccaaccatgagaatgcagcaatgttaaatctcttgagtgagagatttgttatttattgtattacctagttcaatgatttagtcttcaccgttgttcgccg |
529 |
Q |
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| T |
40679042 |
ccaaccatgagaatgcagcaatgttaaatctcttgagtgagagatttgttatttattgtattatctagttcaatgatttagtcttcaccgttgttcgtcg |
40679141 |
T |
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| Q |
530 |
aagatgttcaattctcacatgacattgtcgacaaattaggcgattaaaat |
579 |
Q |
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| T |
40679142 |
aagatgttcaatcctcacatggcattgtcgacaaattaggcgattaaaat |
40679191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 3765294 - 3765334
Alignment:
| Q |
431 |
caaccatgagaatgcagcaatgttaaatctcttgagtgaga |
471 |
Q |
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| T |
3765294 |
caaccctgagaatgcagcagtgttaaatctcttgagggaga |
3765334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 13112079 - 13112029
Alignment:
| Q |
154 |
ttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaagg |
204 |
Q |
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| T |
13112079 |
ttttggtgctactgttttggcttcaagatttgctgcaaatacaaagaaagg |
13112029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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