View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_low_10 (Length: 251)
Name: NF16053_low_10
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 16854599 - 16854375
Alignment:
| Q |
12 |
atgaacattgcaaatgtggcagttgaaacattgattattatattaccccatggctgaaaccataacaaacaaacctcctggtgttttctgaaagttttgg |
111 |
Q |
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| T |
16854599 |
atgaacattgcaaatgtggcagttgaaacattgattattatattaccccatggctgaaaccataacaaacaaacctcctggtgttttctgaaagttttgg |
16854500 |
T |
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| Q |
112 |
gttcatttttgtgcacatgagcatatgaattgttctgcatttgctttgtattgagcccaaatacccgaagactccaccgtcgcatctaaaacaagctaca |
211 |
Q |
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| T |
16854499 |
gttcatttttgtgcacatgagcatatgaattgttctgcatttgctttgtattgagcccaaatacccgaagactccaccgtcgcatctaaaacaagctaca |
16854400 |
T |
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| Q |
212 |
tgaaccgcaatatattggaataatt |
236 |
Q |
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| T |
16854399 |
tgaaccgcaatatattggaataatt |
16854375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 13774436 - 13774627
Alignment:
| Q |
16 |
acattgcaaatgtggcagttgaaacattgattattatattaccccatggctgaaaccataacaaacaaacctcctggtgttttctgaaagttttgggttc |
115 |
Q |
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| T |
13774436 |
acattgcaaatgtagcagttgaaacat--attgat-tattaccccatggctgaaaccat----aacaaacctcctggtgttttctgaaaattttgagttg |
13774528 |
T |
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| Q |
116 |
atttttgtgcacatgagcatatgaattgttctgcatttgctttgtattgagcccaaatacccgaagactccaccgtcgcatctaaaacaagctacatga |
214 |
Q |
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| T |
13774529 |
atttttgtgcacatgaacatatgaattgttctgcatttgctttgtattgagtccaaatacctgaagactccactgtcccatctaaaacaagctacatga |
13774627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 17264711 - 17264846
Alignment:
| Q |
79 |
aacaaacctcctggtgttttctgaaagttttgggttcatttttgtgcacatgagcatatgaattgttctgcatttgctttgtattgagcccaaatacccg |
178 |
Q |
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||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
17264711 |
aacaaacctcccagtgttttttgaaagttttgagttgatttttgtgcacatgagcatatgaattgttctgcattttctttgtattgatcccaaatacctg |
17264810 |
T |
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| Q |
179 |
aagactccaccgtcgcatctaaaacaagctacatga |
214 |
Q |
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| T |
17264811 |
aagactctactgtcccatctaaaacaagctacatga |
17264846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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