View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_low_11 (Length: 251)
Name: NF16053_low_11
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27832766 - 27832995
Alignment:
| Q |
1 |
cgatatcattatacttctactacatgggacaggaccaattaaacgagcttttgcactcttattggtccaactgaattcctataaatagccatcttaagga |
100 |
Q |
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| T |
27832766 |
cgatatcattatacttctactacatgggacaggaccaattaaacgagcttttgcactcttattggtccaactgaattcctataaatagccatcttaagga |
27832865 |
T |
|
| Q |
101 |
tagtgaaacctcagttgtgggatatcaaacacttcccaatggcaacttcaaaagttcttagtattttgttctttgtgttgttaggtttcggcatttgctc |
200 |
Q |
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| T |
27832866 |
tagtgaaacctcagttgtgggatatcaaacacttcccaatggcaacttcgaaagttcttagtattttgttctttgtgttgttaggtttcggcatttgctc |
27832965 |
T |
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| Q |
201 |
tgctgctagaacactcctcacctttggtgt |
230 |
Q |
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| T |
27832966 |
tgctgctagaacactcctcacctttggtgt |
27832995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 27838483 - 27838575
Alignment:
| Q |
138 |
aatggcaacttcaaaagttcttagtattttgttctttgtgttgttaggtttcggcatttgctctgctgctagaacactcctcacctttggtgt |
230 |
Q |
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|||| ||| ||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
27838483 |
aatgacaatttcgaaagttcttggtatttttttctttgtgttgttaggtttcggtatttgctctgccgctagaacactcctcacctttggtgt |
27838575 |
T |
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