View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16053_low_12 (Length: 245)
Name: NF16053_low_12
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 30644917 - 30645027
Alignment:
| Q |
10 |
catcatcagcaagcaaacagtgtaaccaatacacattcaacttcgacacagacccaattattatcaacatccaaaaaactttgatttacacagatttaag |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30644917 |
catcagcagcaagcaaacagtgtaaccaatacacattcaacttcaacacagacccaattattatcaacatccaaaaaacattgatttacacagatttaag |
30645016 |
T |
|
| Q |
110 |
ataacccggtt |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
30645017 |
ataacccggtt |
30645027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 30645106 - 30645136
Alignment:
| Q |
199 |
ttacctcccaacaccaaagacatgaatcaga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30645106 |
ttacctcccaacaccaaagacatgaatcaga |
30645136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University