View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_low_2 (Length: 530)
Name: NF16053_low_2
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 46125745 - 46126245
Alignment:
| Q |
16 |
tactaaaaatacgtcggacatatctctcaggtcacatgttgcatgttttgtgagtctagtccctttcttaaaacatggacaccaaacattgttaattttc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46125745 |
tactaaaaatacgtcggacatatctctcaggtcacatgttgcacgttttgtgagtctagtccctttcttaaaacatggacaccaaacattgtttattttc |
46125844 |
T |
|
| Q |
116 |
gaagctaatagtactttataagtattataaataaataatggtgcttgcctgagtacataattcaaaaagataatgttgttgcctccagaattttgagagt |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125845 |
gaagctaata---ctttataagtattataaataaataatggtgcttgcctgagtacataattcaaaaagataatgttgttgcctccagaattttgagagt |
46125941 |
T |
|
| Q |
216 |
cacccttcctgttgatgttatacctgacaggctctactggactgactctgtg------agtagtctctctagcaagcttgcttactcttttgtgataagt |
309 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125942 |
cacccttcctgttgatgttatacctgacaggctctgatggactgactctgtggatggtagtagtctctctagcaagcttgcttactcttttgtgataagt |
46126041 |
T |
|
| Q |
310 |
gttggccaaaggtctccctggtgtaagttgttatggaatacctaaattcctcctactcgtgccttcattacttggagattgcttcagaataaactcccca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46126042 |
gttggccaaaggtctccctggtgtaagttgttatggaatacctatattcctcctactcgtgccttcattacttggagattgcttcagaataaactcccca |
46126141 |
T |
|
| Q |
410 |
ccgatgagaatttttaagaaaaaggggttgcatcatagtctccatttgctgcttctgcaataagactgctgaaactgctcatcatgtctttcttgattgt |
509 |
Q |
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| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46126142 |
ctgatgagaa--tttaagaaaaaggggttgcatcatagtctccatttgctgcttctgcaacaagactgctgaaactgctcatcatgtctttcttgattgt |
46126239 |
T |
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| Q |
510 |
gctatt |
515 |
Q |
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|||||| |
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| T |
46126240 |
gctatt |
46126245 |
T |
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