View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_low_4 (Length: 455)
Name: NF16053_low_4
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 23 - 444
Target Start/End: Original strand, 36253929 - 36254354
Alignment:
| Q |
23 |
agccactgctctgttaagccagcattactgagcagactctgaaat-acaaggagattattaaggacagtgtcccgaggcaccttatatttatatctcagg |
121 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36253929 |
agccgctgctctgttaagccagcattattgagcagactctgaaattacaaggagattattaaggacagtgtcccgaggcaccttatatttatatctcagg |
36254028 |
T |
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| Q |
122 |
ttaagtcaattgggactctgagacag--ctggagaccgaattacctccaagcccaatctcacagtgct--acccttgagtgatagggattgccccctcgg |
217 |
Q |
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|||||||||||||||||||||| | ||||| || ||||| ||| | |||||||||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
36254029 |
ataagtcaattgggactctgagattgggctggaaactgaattgccttcg-gcccaatctcacagtgctctacccttgagtgatagggatttgcccttcgg |
36254127 |
T |
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| Q |
218 |
aaactcaacatcgatcatactttgatattttccttcatcttaataccctcacttgagtgataggtttgcgttactaaacccggtgctgaaagcttctcac |
317 |
Q |
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||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36254128 |
aaactcaaccttgatcatactttgatattttccgtcattttaataccctcacttgagtgataggtttgcgttactaaacccggtgctgaaatcttctcac |
36254227 |
T |
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| Q |
318 |
tactcatatataaagaccaatacaactctttagtaaacgatgtgggacttgtttatttaagttttatcatgaaaggaactagatttatatcgttgttctc |
417 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36254228 |
tactcatatataaagaccgatacaactctttagtaaacgatgtgggacttatttatttaagttttatcatgaaaggaactagattgatatcgttgttctc |
36254327 |
T |
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| Q |
418 |
caagcagcatctacgtccttcatctca |
444 |
Q |
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| T |
36254328 |
caagcagcatctacgtccttcttctca |
36254354 |
T |
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