View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_low_5 (Length: 415)
Name: NF16053_low_5
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 10067292 - 10067682
Alignment:
| Q |
16 |
aaaacaaataccaaaatgctccaacaacctaatatcacaaataatttggattttttatcataaaacttagcttatagtaacaaggaacatacataaacta |
115 |
Q |
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| T |
10067292 |
aaaacaaataccaaaatgctccaacaacctaatatcacaaataatttggattttttatcataaaacttagcttatagtaacaaggaacatacataaacta |
10067391 |
T |
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| Q |
116 |
atgcttgtgacagaagtaacaaaattacaagcttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaat |
215 |
Q |
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| T |
10067392 |
atgcttgtgacagaagtaacaaaattacaagcttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaat |
10067491 |
T |
|
| Q |
216 |
ataccagaagtgcttgttacttcattgaacaacgtatagattcgcataagtcttggcgcgtattgtgttattatcgtatacttcaaccaatcctttgtta |
315 |
Q |
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| T |
10067492 |
ataccagaagtgcttgttacttcattgaacaacgtatagattcgcataagtcttggcgcgtattgtgttattatcgtatacttcaaccaatcctttgtta |
10067591 |
T |
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| Q |
316 |
tatatggaactgagccttgtggaattggaatcatagctaaaatcaccatctaataacacagcattaaaatgttaaaacaacatcatagtat |
406 |
Q |
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| T |
10067592 |
tatatggaactgagccttgtggaattggaatcatagctaaaatcaccatctaataacacagcattaaaatgttaaaacaacatcatagtat |
10067682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 48464735 - 48464639
Alignment:
| Q |
148 |
ttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttcattgaa |
244 |
Q |
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| T |
48464735 |
ttacatgacttgctagcatgtagaggaaaagattgtaaacagctccagcccatgctgtctctgtcaatatgcctgaagttctagttacttctttgaa |
48464639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 41390408 - 41390346
Alignment:
| Q |
149 |
tacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagt |
211 |
Q |
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|||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
41390408 |
tacatgacttgcaagcatgtaaagaaagagattaaatgcagctccagcccatgctgtttcagt |
41390346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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