View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16053_low_7 (Length: 320)
Name: NF16053_low_7
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 194322 - 194023
Alignment:
| Q |
1 |
aatgaaaggattattaatcaaacatgagacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccctctctagctgtggcaaatac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
194322 |
aatgaaaggattgttaatcaaacatgagacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccatctctagttgtggcaaatac |
194223 |
T |
|
| Q |
101 |
acatccaagtcaagccgttttggttcattctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttctt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194222 |
acatccaagtcaagccgttttggttcatcctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttctt |
194123 |
T |
|
| Q |
201 |
ctaaatctctagcttttctcatctctttgccccagcttttctggtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194122 |
ctaaatctctagcttttctcatctctttgccccagc-tttctagtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaata |
194024 |
T |
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