View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16053_low_9 (Length: 299)
Name: NF16053_low_9
Description: NF16053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16053_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 86 - 267
Target Start/End: Original strand, 35907881 - 35908062
Alignment:
| Q |
86 |
gaatttcaagcaacccaataaaccattcttcatagaacaccataatgatccatcaaatcaatagccaaagacaataaattaacaaaaccttgatcaaaag |
185 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35907881 |
gaatttcaggcaacccaataaaccattcttcatagaacaccatagtgatccatcaaatcaatagccaaagacaataaattaacaaaaccttgatcaaaag |
35907980 |
T |
|
| Q |
186 |
gtgaactccatagatcccaagccatgttatccaagtaactatttcctgaaaaaacacaaatcaataacaacataacaaaaca |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35907981 |
gtgaactccatagatcccaagccatgttatccaagtaactatttcctgaaaaaacacaaatcaataacaacataacaaaaca |
35908062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 35907812 - 35907850
Alignment:
| Q |
17 |
atagtcatcatcgaaagctaacatcagcaaattacatgc |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35907812 |
atagtcatcatcgaaagctaacatcagcaaattacatgc |
35907850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 3361922 - 3362020
Alignment:
| Q |
170 |
aaaccttgatcaaaaggtgaactccatagatcccaagccatgtt----atccaagtaactatttcctgaaaaaacacaaatcaataacaacataacaaaa |
265 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
3361922 |
aaaccttgatcaaaagatgaactccatagattaaaagccatgtatgaaatgcaagtaactatttcctgaaa---cacaaaacagtaacaacataacaaaa |
3362018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University