View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16054_high_10 (Length: 438)
Name: NF16054_high_10
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 22979709 - 22980119
Alignment:
| Q |
18 |
actcgccttgtaaacaacacataacaacgctctcagaattttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatagagtcaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22979709 |
actcgccttgtaaacagcacataacaacgctctcagaattttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatagagtcaa |
22979808 |
T |
|
| Q |
118 |
acttgaaagataaaagataaatgcaagtgaataattttactgcaaaataacgctcaatgagatggctcaccatattcgtttgcagcatttacagccacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22979809 |
acttgaaagataaaagataaatgcaagtgaataatttaactgcaaaataacgctcaatgagatggctcaccatattcgtttgcagcatttacagccacaa |
22979908 |
T |
|
| Q |
218 |
cattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctccaggaagtgcttcgttccagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22979909 |
cattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctccaggaagtgcttcgttccagtt |
22980008 |
T |
|
| Q |
318 |
tacat-aaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgaaatcacataaatgatagcttagattccagaagc |
416 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22980009 |
tatataaaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgagatcacataaatgatagcttagattccagaagc |
22980108 |
T |
|
| Q |
417 |
ccagaacctat |
427 |
Q |
| |
|
||||||||||| |
|
|
| T |
22980109 |
ccagaacctat |
22980119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 23808695 - 23808285
Alignment:
| Q |
18 |
actcgccttgtaaacaacacataacaacgctctcagaattttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatagagtcaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23808695 |
actcgccttgtaaacagcacataacaacgctctcagaattttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatagagtcaa |
23808596 |
T |
|
| Q |
118 |
acttgaaagataaaagataaatgcaagtgaataattttactgcaaaataacgctcaatgagatggctcaccatattcgtttgcagcatttacagccacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23808595 |
acttgaaagataaaagataaatgcaagtgaataatttaactgcaaaataacgctcaatgagatggctcaccatattcgtttgcagcatttacagccacaa |
23808496 |
T |
|
| Q |
218 |
cattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctccaggaagtgcttcgttccagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23808495 |
cattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctccaggaagtgcttcgttccagtt |
23808396 |
T |
|
| Q |
318 |
tacat-aaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgaaatcacataaatgatagcttagattccagaagc |
416 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23808395 |
tatataaaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgagatcacataaatgatagcttagattccagaagc |
23808296 |
T |
|
| Q |
417 |
ccagaacctat |
427 |
Q |
| |
|
||||||||||| |
|
|
| T |
23808295 |
ccagaacctat |
23808285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 2629791 - 2630198
Alignment:
| Q |
18 |
actcgccttgtaaacaacacataacaacgctctcagaattttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatagagtcaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2629791 |
actcgccttgtaaacagcacataacaacgctctcagaattttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatagagtcaa |
2629890 |
T |
|
| Q |
118 |
acttgaaagataaaagataaatgcaagtgaataattttactgcaaaataacgctcaatgagatggctcaccatattcgtttgcagcatttacagccacaa |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
2629891 |
acttaaaagataaaagataaatgcaagtgaataattttactgcaaaatagcgctcaatgagatggctcaccatattcgtttgcagcatttgcagcca--a |
2629988 |
T |
|
| Q |
218 |
cattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctccaggaagtgcttcgttccagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2629989 |
cattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacttctgagggttgagactactgcagtagctccaggaagtgcttcgttccagtt |
2630088 |
T |
|
| Q |
318 |
tacataaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgaaatcacataaatgatagcttagattccagaagcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2630089 |
tacataaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgagatcacataaatgatagcttagattccagaagcc |
2630188 |
T |
|
| Q |
418 |
cagaacctat |
427 |
Q |
| |
|
|||||||||| |
|
|
| T |
2630189 |
cagaacctat |
2630198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 198 - 427
Target Start/End: Complemental strand, 874151 - 873924
Alignment:
| Q |
198 |
tgcagcatttacagccacaacattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctcca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
874151 |
tgcagcatttacagccacaacattagcctcgccgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctcca |
874052 |
T |
|
| Q |
298 |
ggaagtgcttcgttccagtttacataaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgaaatcacataaatga |
397 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
874051 |
ggaagtacttcgccccagtttacataaaaaacatctcctgcacattaggaataacactgaaata--ctccagaaaaaagatactgagatcacataaatga |
873954 |
T |
|
| Q |
398 |
tagcttagattccagaagcccagaacctat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
873953 |
tagcttagattccagaagcccagaacctat |
873924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 424
Target Start/End: Complemental strand, 12241855 - 12241453
Alignment:
| Q |
22 |
gccttgtaaacaacacataacaacgctctcagaattttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatagagtcaaactt |
121 |
Q |
| |
|
|||||||||||| || |||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
12241855 |
gccttgtaaacagcagataacaacactttcaaaatcttaagtcttgttttatggaagggtatgcatgaaagtttagggctacaataatatagtcaaacat |
12241756 |
T |
|
| Q |
122 |
gaaagataaaagataaatgcaagtgaataattttactgcaaaataacgctcaatgagatggctcaccatattcgtttgcagcatttacagccacaacatt |
221 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12241755 |
gaaaggtaaaagataattgcaagtgaataatttaactgcaaaataatgctcaatgagatggctcaccgtattcgtttgcagcatttacagccacaacatt |
12241656 |
T |
|
| Q |
222 |
agcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctccaggaagtgcttcgttccagtttaca |
321 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
12241655 |
agcctcgccgttaatcttactcatttgttcctcgctaccaaaacctccaagggttgagactactgcagtagctccaggaagtacttcgtcccagtttaca |
12241556 |
T |
|
| Q |
322 |
taaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgaaatcacataaatgatagcttagattccagaagcccaga |
421 |
Q |
| |
|
|||||||||||||||||| |||||||| | || ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12241555 |
taaaaaacatctcctgcatattaggcacaacaatgaaatactctccagaaaaaagatagtgagatcacataaatgataacttagattccagaagcccaga |
12241456 |
T |
|
| Q |
422 |
acc |
424 |
Q |
| |
|
||| |
|
|
| T |
12241455 |
acc |
12241453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 198 - 427
Target Start/End: Original strand, 274059 - 274286
Alignment:
| Q |
198 |
tgcagcatttacagccacaacattagcctcgctgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctcca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274059 |
tgcagcatttacagccacaacattagcctcgccgttaatcttactcatttgttcctcgctaccaaaacctccgagggttgagactactgcagtagctcca |
274158 |
T |
|
| Q |
298 |
ggaagtgcttcgttccagtttacataaaaaacatctcctgcacattaggcataccactgaaatactctccagaaaaaagatactgaaatcacataaatga |
397 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
274159 |
ggaagtacttcgccccagtttacataaaaaacatctcctgcacattaggaataacacagaaata--ctacagaaaaaagatactgagatcacataaatga |
274256 |
T |
|
| Q |
398 |
tagcttagattccagaagcccagaacctat |
427 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
274257 |
tagcttagattccagaagcccagaaactat |
274286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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