View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16054_high_13 (Length: 371)
Name: NF16054_high_13
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 35819092 - 35819434
Alignment:
| Q |
19 |
tacttgagtcatcctcccaaacagggctgctgatgaagaacagtggcattgtggagccattccataagaaccgcttgctttgagtaacaagaaaagtttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35819092 |
tacttgagtcatcctcccaaacagggctgctgatgaagaacagtggcattgtggagccattccataagaaccgcttgctttgagtaacaagaaaagtttg |
35819191 |
T |
|
| Q |
119 |
gaggcatgggataaccaataggccaagcattgttgatatcctgggtctgaagtccaaatggaaatatcagtgacttgaagtgacatgttaggaaaaggag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35819192 |
gaggcatgggataaccaataggccaagcattgttgatatcctgggtctgaagtccaaatggaaatatcagtgacttgaagtgacatgttaggaaaaggag |
35819291 |
T |
|
| Q |
219 |
caagaaaaagagcattagcatgagcaagttttgcttttcataccttaattgcatggtcaatagtttgggtgatacgatcgaaaacattagtactagcacc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35819292 |
caagaaaaagagcattagcatgagcaagttttgcttttcataccttaattgcatggtcaatagtttgggtgatacgatcgaaaacattagtactagcacc |
35819391 |
T |
|
| Q |
319 |
ctcaacttcaaatgatctccaatgcaagagacatttgcctatg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35819392 |
ctcaacttcaaatgatctccaatgcaagagacatttgtctatg |
35819434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 47701747 - 47701684
Alignment:
| Q |
19 |
tacttgagtcatcctcccaaacagggctgctgatgaagaacagtggcattgtggagccattcca |
82 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| ||||||| | ||| ||| |||||||||||| |
|
|
| T |
47701747 |
tacttgtgtcatcctcccaaacagggttgctgaggaagaacggcggcgttgaggagccattcca |
47701684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 47701439 - 47701403
Alignment:
| Q |
319 |
ctcaacttcaaatgatctccaatgcaagagacatttg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47701439 |
ctcaacttcaaatgatctccaatgcaagaggcatttg |
47701403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University