View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_15 (Length: 360)
Name: NF16054_high_15
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 143 - 341
Target Start/End: Complemental strand, 30942206 - 30942015
Alignment:
| Q |
143 |
cgatttcgtttatttttaagtcaactgatttcatctttgttgtgttgggacttgagacaatattaatgttaaaaaagattttattaacttaaatttgaaa |
242 |
Q |
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| T |
30942206 |
cgatttcgtttatttttaagtcaactgatttcatctttgttgtgttgggac-------aatattaatgttaaaaaagattttattaacttaaatttgaaa |
30942114 |
T |
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| Q |
243 |
atagtataatacaagtctttttatttcactcgaaaagtatgtggcctttttatcaagtaagatttcaaaaattattggaggtttaaggcaattgccttt |
341 |
Q |
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| T |
30942113 |
atagtataatacaagtctttttatttcactcgaaaagtatgtggcatttttatcaagtaagatttcaaaaaatattggaggtttaaggcgattgccttt |
30942015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 30942334 - 30942273
Alignment:
| Q |
15 |
caaaggtgcattaggcccaattgttatttgtgtgtgaggagcgtagcgacctatgctcctgc |
76 |
Q |
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| T |
30942334 |
caaaggtgcattaggcccaattgttatttgtgtgtgaggagcgtagcgacctatgctcctgc |
30942273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 33702705 - 33702630
Alignment:
| Q |
197 |
agacaatattaatgttaaaaaagattttattaactt-aaatttgaaaatagtataatacaagtctttttatttcac |
271 |
Q |
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| T |
33702705 |
agacaatattaattttaaacaagattttattaatttaaaatttgaaaatagtataatatgaggccttttatttcac |
33702630 |
T |
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