View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_18 (Length: 348)
Name: NF16054_high_18
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 44518760 - 44519042
Alignment:
| Q |
18 |
attagtacaatttatatgtggatggaagaaaatagcaacatgcattataggtccttaaattatgtaaatgacaccagctagaaaagtaatgctatctcaa |
117 |
Q |
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| T |
44518760 |
attagtacaatttatatgtggatggaagaaaatagcaacatacattataggtccttaaattatgtaaatgacactagctagaaaagtaatgctatctcaa |
44518859 |
T |
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| Q |
118 |
gtagcataatcaaatgccttagccatttgtacgtgtaattaattttcgtccgcataagcgtgctagtgaaagtattcaaataaatgatgtaggacttgta |
217 |
Q |
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| T |
44518860 |
gtagcataatcaaatgccttagccatttgtacgtgtaattaattttcgtccgcataagcgtgctagtgaaagtattcaaataaatgatgtaggacttgta |
44518959 |
T |
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| Q |
218 |
cgttggtgaaaattacaaagaagctaacatctacacacatgtgcaccgtatgaagctttcatctttgtaatatatctatgagt |
300 |
Q |
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| T |
44518960 |
cgttggtgaaaattacaaagaagctaacatctacacacatgtgcaccgtatgaagctttcatctttgtaatatatttatgagt |
44519042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 44519025 - 44519062
Alignment:
| Q |
300 |
tgtaatatatttatgagttgtgttatttgaacattcat |
337 |
Q |
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| T |
44519025 |
tgtaatatatttatgagttgtgttatttgaacattcat |
44519062 |
T |
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