View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_20 (Length: 343)
Name: NF16054_high_20
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 51429862 - 51430142
Alignment:
| Q |
16 |
aatatcagacacatgagagacggttgttcctgaagcagctcctaggtaaaggactttagcaccaggtttcttaataaaacaacnnnnnnnnngatatcaa |
115 |
Q |
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| T |
51429862 |
aatatcagacacatgagagacggttgttcctgaagcagctcctaggtaaaggactttagcaccaggtttcttaataaaacaacaaaaaaaa-gatatcaa |
51429960 |
T |
|
| Q |
116 |
tataatgtatttgaaggacaatgttaatgttacaggaatatgaagcaacttacaatccatatgttgtcgactcctccaaggacagcagctgccaacttgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51429961 |
tataatgtatttgaaggacaatgttaatgttacaggaatatgaagcaacttacaatccatatgttgtcgactcctccaaggacagcagctgccaacttgg |
51430060 |
T |
|
| Q |
216 |
aacggaaagggttccaaattctatactcagtcttagtaccatcctcgttctgcagaaa-aatgtcgcgaaattgtcattgca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
51430061 |
aacggaaagggttccaaattctatactcagtcttagtaccatcctcgttctgcagaaagtgtgtcgcaaaattgtcattgca |
51430142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 51430185 - 51430217
Alignment:
| Q |
311 |
agaaaaacagagatgaacttagggccagtttta |
343 |
Q |
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| T |
51430185 |
agaaaaacagagatgaacttagggccagattta |
51430217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 269
Target Start/End: Complemental strand, 17129021 - 17128916
Alignment:
| Q |
164 |
cttacaatccatatgttgtcgactcctccaaggacagcagctgccaacttggaacggaaagggttccaaattctatactcagtcttagtaccatcctcgt |
263 |
Q |
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| T |
17129021 |
cttacaatccatatgttgtcaacaccaccaaggacagcagctgccaacttggagcggaaagggttccaaattctatactcaacttttgtaccatcctcat |
17128922 |
T |
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| Q |
264 |
tctgca |
269 |
Q |
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|||||| |
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| T |
17128921 |
tctgca |
17128916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 17129178 - 17129100
Alignment:
| Q |
16 |
aatatcagacacatgagagacggttgttcctgaagcagctcctaggtaaaggactttagcaccaggtttcttaataaaa |
94 |
Q |
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|||||| |||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
17129178 |
aatatcggacacatgagagacagttgtcccagaagcagctcctaagtaaaggactttagcaccaggtttctttataaaa |
17129100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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