View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_26 (Length: 298)
Name: NF16054_high_26
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 23239319 - 23239428
Alignment:
| Q |
76 |
tgatgaatgcatcacctagattatgatgtgagtcctgtagatgttgttgatgagcttggaatcgtacgtcaagaaaatgcacttgccgcattccatctag |
175 |
Q |
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| T |
23239319 |
tgatcaatgcatcacctagattatgatgtgagtcctgtagatgttgttgatgagcttggaatcgtacgtcaagaaaatgcacttgccgcattccatctag |
23239418 |
T |
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| Q |
176 |
attgtaacaa |
185 |
Q |
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| T |
23239419 |
attgtaacaa |
23239428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 23240074 - 23240179
Alignment:
| Q |
181 |
aacaatgattgtatttcatattaatcaacatcacatcttttagggtattgatgctgctcgggtggagaaaattcttgacatggcttttataactctcaac |
280 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23240074 |
aacaatgattgtaattcatattaatcaacatcgcatcttttagggtattgatgctgctcgggtggagaaaattcttgacatggcttttataactctcaac |
23240173 |
T |
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| Q |
281 |
aagaat |
286 |
Q |
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|||||| |
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| T |
23240174 |
aagaat |
23240179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 44146128 - 44146027
Alignment:
| Q |
185 |
atgattgtatttcatattaatcaacatcacatcttttagggtattgatgctgctcgggtggagaaaattcttgacatggcttttataactctcaacaaga |
284 |
Q |
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| T |
44146128 |
atgactgtatttcatattaatcaacatcatattctttagggtattgatggtgctcggggggagaaaattcttggcatggcttctataaccctcaacaaga |
44146029 |
T |
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| Q |
285 |
at |
286 |
Q |
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|| |
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| T |
44146028 |
at |
44146027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 25803908 - 25803829
Alignment:
| Q |
207 |
aacatcacatcttttagggtattgatgctgctcgggtggagaaaattcttgacatggcttttataactctcaacaagaat |
286 |
Q |
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|||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
25803908 |
aacatcacgtcctttagggtattgatggtgctcgagtggagaaaattcttgacatggctttgataaccctcaacaagaat |
25803829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 5750146 - 5750067
Alignment:
| Q |
207 |
aacatcacatcttttagggtattgatgctgctcgggtggagaaaattcttgacatggcttttataactctcaacaagaat |
286 |
Q |
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| T |
5750146 |
aacatcacgtcccttagggtattgatggtgctcgtgtggagaaaattcttgacatggcttctataaccctcaacaagaat |
5750067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 32654240 - 32654321
Alignment:
| Q |
189 |
ttgtatttcatattaatcaacatcacatcttttagggtattgatgctgctcgggtggagaaaattcttgacatggcttttataa |
272 |
Q |
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||||||||||||||| |||| ||||||| || |||||||||||| ||||| ||| |||||||||| ||||||||||||||| |
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| T |
32654240 |
ttgtatttcatattagtcaa--tcacatccttcagggtattgatggtgctctcgtgaagaaaattctcaacatggcttttataa |
32654321 |
T |
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