View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_33 (Length: 253)
Name: NF16054_high_33
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 54180011 - 54180233
Alignment:
| Q |
13 |
aggagcacagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaa |
112 |
Q |
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| T |
54180011 |
aggaacacagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaa |
54180110 |
T |
|
| Q |
113 |
tcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccaca |
212 |
Q |
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| T |
54180111 |
tcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaaacatccataacatgaacaggatcgccaca |
54180210 |
T |
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| Q |
213 |
acgatctttggtataaccataat |
235 |
Q |
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|||||||||| |||||||||||| |
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| T |
54180211 |
acgatctttgttataaccataat |
54180233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 1211366 - 1211193
Alignment:
| Q |
41 |
taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta |
140 |
Q |
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| T |
1211366 |
taggaaaatgccacaaatattgcttgtatgctgatagtggatgcaagaaaacaggaatacaacccgccaaaatcgaatcaaaaattgatcttctagtaaa |
1211267 |
T |
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| Q |
141 |
agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaac |
214 |
Q |
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| T |
1211266 |
agaatcccccggcggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcgacaac |
1211193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 38102671 - 38102604
Alignment:
| Q |
79 |
ggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatc |
146 |
Q |
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| T |
38102671 |
ggatgaaaaaacacaggaatacaaccagctaaaattgaatcaaaaattgatcttcttgtgtatgaatc |
38102604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 41948635 - 41948440
Alignment:
| Q |
19 |
acagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaat |
118 |
Q |
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| T |
41948635 |
acagagtaattagaaccgtttttaggaaaatgccacaaatattgcttgtatgctgatagtggatgaaagaaaacaggaatacaacccgccaaaattgaat |
41948536 |
T |
|
| Q |
119 |
caaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaac |
214 |
Q |
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| T |
41948535 |
caaaaattgatcatctagtaaaagaatcccccatcggttgtaaacaaaataccgaattctgaaaattatccataacttgaacaggatcgcgacaac |
41948440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 22795110 - 22794935
Alignment:
| Q |
35 |
tatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctcct |
134 |
Q |
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||||| ||||||||||||||| ||||||||| || | ||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||| || |
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| T |
22795110 |
tatttttaggaaaatgccacatatattgcttatacgctgaatgtggatgaaagaaaacaggaatacagccggccaaaatcgaatcaaaagttgatcttct |
22795011 |
T |
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| Q |
135 |
tgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgcca |
210 |
Q |
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| T |
22795010 |
ggtaaaagaatcaccaggaggttgtaaacaaaaaactgatttctgaaaaacatccagaacatgaacgggatcgcca |
22794935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 41943099 - 41942932
Alignment:
| Q |
41 |
taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta |
140 |
Q |
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||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||| || || | |
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| T |
41943099 |
taggaaaatgccacaaatattgcttgtatgctgacagtggatgcaagaaaacaggaatacaacctgccaaaatcgaatcaaatattgatcttctagtaaa |
41943000 |
T |
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| Q |
141 |
agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgc |
208 |
Q |
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| T |
41942999 |
agaatccccaaccggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgc |
41942932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 39485527 - 39485600
Alignment:
| Q |
97 |
atacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaac |
170 |
Q |
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|||||||| ||||| ||||||||||||| ||||| ||||| |||||||| ||| | ||||| | ||||||||| |
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| T |
39485527 |
atacaaccagccaacatcgaatcaaaagcagatcttcttgtataagaatcaccctgaggttgaagacaaaaaac |
39485600 |
T |
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