View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_38 (Length: 244)
Name: NF16054_high_38
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 29643741 - 29643520
Alignment:
| Q |
1 |
aaaaaatcata-gagtttgttatcaaccatttatcaaaactagacgatgacaatattttaagaattactaatgtctaatcacacttaatttctgtgtaat |
99 |
Q |
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| T |
29643741 |
aaaaaatcataagagtttgttatcaaccatttatcaaaactagacgatgacaatattttaagaattactaatgtctaatcacacttaatttctgtgtaat |
29643642 |
T |
|
| Q |
100 |
agcttatcaatagaagttacagaactagaaaccaagttatgataaacagtttgagtaagtgcgtaaagcataagcacttatc--gtatgagtgttcatgt |
197 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |
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| T |
29643641 |
agcttatcgatagaagttacagaactagaaaccaagttatgataaacagtttgagtaagcacgtaaagcataagcacttatcatatatgagtgttcattt |
29643542 |
T |
|
| Q |
198 |
atatgttatttctataacaaaa |
219 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
29643541 |
atatgttattcctataacaaaa |
29643520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 42817544 - 42817480
Alignment:
| Q |
155 |
taagtgcgtaaagcataagcacttatcgtatgagtgttcatgtatatgttatttctataacaaaa |
219 |
Q |
| |
|
||||||| || ||||||||| ||||| ||| |||||| || ||||||||||||||||| ||||| |
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| T |
42817544 |
taagtgcttatagcataagcgtttatcatataagtgttgatttatatgttatttctataccaaaa |
42817480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 4200131 - 4200195
Alignment:
| Q |
155 |
taagtgcgtaaagcataagcacttatcgtatgagtgttcatgtatatgttatttctataacaaaa |
219 |
Q |
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|||||||||| |||||||||||||||| | | |||||| || |||| ||||||| |||||||||| |
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|
| T |
4200131 |
taagtgcgtatagcataagcacttatcatctaagtgtttatatataagttatttttataacaaaa |
4200195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 30207723 - 30207672
Alignment:
| Q |
170 |
taagcacttatcgtatgagtgttcatgtatatgttatttctataacaaaaaa |
221 |
Q |
| |
|
|||||||||||| ||| |||| | |||||||||||| ||||||||||||||| |
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| T |
30207723 |
taagcacttatcatataagtgcttatgtatatgttagttctataacaaaaaa |
30207672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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