View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_41 (Length: 238)
Name: NF16054_high_41
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_41 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35042814 - 35043025
Alignment:
| Q |
1 |
attattgaaggatcacacctaatccgcttgagaaaacagacacttttctttgtttaacacaactcatgatttacattattgtgactaatttgtcgttaat |
100 |
Q |
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| T |
35042814 |
attattgaaggatcacacctgatccacttgagaaaacagacacgtttctttgtttaacacaactcatgatttacatttttgtgacttataac-----aat |
35042908 |
T |
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| Q |
101 |
atctccaatttttcaataattaattgaataatcatgctgcagttttgtgagagtcagtaaattcttatatatatcctaattggttggggatcttaatctc |
200 |
Q |
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| T |
35042909 |
ttgtcg---ttttcaataattaattgaataatcatgctgcagttttgtgagagtcagtcaattcttatatatatcctaattggttggggatcttaatctc |
35043005 |
T |
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| Q |
201 |
gcaagccactgagatcattt |
220 |
Q |
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| T |
35043006 |
gcaagccactgagaacattt |
35043025 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 50847510 - 50847563
Alignment:
| Q |
103 |
ctccaatttttcaataattaattgaataatcatgctgcagttttgtgagagtca |
156 |
Q |
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| T |
50847510 |
ctccaatttttcaagagttaattaaataatcatgctgcaattttgtgagagtca |
50847563 |
T |
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