View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16054_high_44 (Length: 236)

Name: NF16054_high_44
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16054_high_44
NF16054_high_44
[»] chr2 (2 HSPs)
chr2 (1-221)||(29643840-29644060)
chr2 (62-94)||(1634996-1635028)
[»] chr6 (1 HSPs)
chr6 (62-134)||(9685089-9685161)
[»] chr4 (1 HSPs)
chr4 (70-155)||(41250904-41250989)
[»] chr3 (1 HSPs)
chr3 (63-95)||(36960425-36960457)
[»] chr1 (1 HSPs)
chr1 (58-94)||(35442400-35442436)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29643840 - 29644060
Alignment:
Q  1 ctgcatcagctgctggaacaatcatggtacttctcttcctatgtttgtatgcaccgtcatataaaacatttttacacatgcattcaatcaaatcttccca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29643840 ctgcatcagctgctggaacaatcatggtacttctcttcctatgtttgtatgcaccgtcatataaaacatttttacacatgcattcaatcaaatcttccca 29643939  T
Q  101 tgtagatatttgcggagatgttttagaaactaacaaaacaaagtgacatcatagtataatttgattcaatgcatgtggaaacaagttttgcatagcacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||| |    
T  29643940 tgtagatatttgcggagatgttttagaaactaacaaaacaaagtgacatcatagtgtaatttgattgtatgcatgtggaaacaagttttgcataacaccg 29644039  T
Q  201 tatttggaaaaacattaaaat 221  Q
    ||||||||||||||| |||||    
T  29644040 tatttggaaaaacatgaaaat 29644060  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 1634996 - 1635028
Alignment:
Q  62 taaaacatttttacacatgcattcaatcaaatc 94  Q
    |||||||||||||||||||||| ||||||||||    
T  1634996 taaaacatttttacacatgcatccaatcaaatc 1635028  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 9685161 - 9685089
Alignment:
Q  62 taaaacatttttacacatgcattcaatcaaatcttcccatgtagatatttgcggagatgttttagaaactaac 134  Q
    |||||| ||| ||||||||||||||||||||||     ||||||||||||  |||||| ||||||||||||||    
T  9685161 taaaacttttctacacatgcattcaatcaaatcaagatatgtagatatttctggagatattttagaaactaac 9685089  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 41250989 - 41250904
Alignment:
Q  70 ttttacacatgcattcaatcaaatcttcccatgtagatatttgcggagatgttttagaaactaacaaaacaaagtgacatcatagt 155  Q
    |||||||||| |||||||||| || |  ||||  ||||||| | |||||||| |||  ||||||||||||||| |||||| |||||    
T  41250989 ttttacacatacattcaatcacatttcaccatacagatattcgtggagatgtattaagaactaacaaaacaaattgacattatagt 41250904  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 36960457 - 36960425
Alignment:
Q  63 aaaacatttttacacatgcattcaatcaaatct 95  Q
    |||||||||||||||||||||| ||||||||||    
T  36960457 aaaacatttttacacatgcatttaatcaaatct 36960425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 35442400 - 35442436
Alignment:
Q  58 catataaaacatttttacacatgcattcaatcaaatc 94  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  35442400 catataaaatatttttacacatgcaatcaatcaaatc 35442436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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